RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CXCR1P25024 350 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 CSNK1A1P48729 337 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 AP1S1P61966 158 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 GPM6BQ13491 265 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF174Q15697 407 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 RAB11BQ15907 218 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ANGPTL5Q86XS5 388 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF516Q92618 1163 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 XAGE2Q96GT9 111 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 NPAS1Q99742 590 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 BOCQ9BWV1 1114 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 LPAR5Q9H1C0 372 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 TMPRSS4Q9NRS4 437 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 SAE1Q9UBE0 346 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 CHIC2Q9UKJ5 165 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 MAB21L2Q9Y586 359 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 RRBP1Q9P2E9 1410 aaKnown RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 RAB36O95755 333 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 SNRPCP09234 159 aaKnown RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 RARAP10276 462 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 MTHFD2P13995 350 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 LHCGRP22888 699 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 MYF6P23409 242 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 PPT1P50897 306 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 GDF10P55107 478 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 CTBP1Q13363 440 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 CAMK2GQ13555 558 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 BAATQ14032 418 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 VMACQ2NL98 169 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 PHF19Q5T6S3 580 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 TBC1D10CQ8IV04 446 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 FOXP4Q8IVH2 680 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 C3orf30Q96M34 536 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ZSWIM1Q9BR11 485 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 DBR1Q9UK59 544 aaKnown RBP3.4□□□□□ -1.86
SCN1A-221ENST00000641996 AFF2P51816 1311 aa3.4□□□□□ -1.86
SCN1A-221ENST00000641996 ARNTLO00327 626 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 IMPA2O14732 288 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TNFRSF9Q07011 255 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZYXQ15942 572 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF699Q32M78 642 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LYPD6BQ8NI32 183 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 KCMF1Q9P0J7 381 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ABCB11O95342 1321 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RTL1A6NKG5 1358 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF207O43670 478 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SIGLEC6O43699 453 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 OR2J3O76001 311 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 GABRA5P31644 462 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 HPCAL1P37235 193 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TCEAL5Q5H9L2 206 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF484Q5JVG2 852 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CELF3Q5SZQ8 465 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 FAM220AQ7Z4H9 259 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RANBP3LQ86VV4 465 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CCDC54Q8NEL0 328 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 BPIFB6Q8NFQ5 453 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 OR6N1Q8NGY5 312 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PCDH19Q8TAB3 1148 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SFT2D1Q8WV19 159 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 HAS2Q92819 552 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CMSS1Q9BQ75 279 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ADI1Q9BV57 179 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 DDA1Q9BW61 102 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM185BQ9H7F4 350 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MAST3O60307 1309 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ALPK3Q96L96 1907 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1W2PRX2 142 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MANBAO00462 879 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RAB29O14966 203 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SIVA1O15304 175 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LRIG2O94898 1065 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 GPIP06744 558 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PGAM1P18669 254 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A2P23975 617 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PSMB9P28065 219 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 AKR1C2P52895 323 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 GPR17Q13304 367 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 NFATC2Q13469 925 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 EXOSC2Q13868 293 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MPPE1Q53F39 396 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CRTC3Q6UUV7 619 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 AHSA2Q719I0 299 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RNF130Q86XS8 419 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LRRC18Q8N456 261 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 DNAJB14Q8TBM8 379 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 PSMG2Q969U7 264 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 CPNE1Q99829 537 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RTN4RQ9BZR6 473 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 MBNL1Q9NR56 388 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 GMPR2Q9P2T1 348 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ECM29Q5VYK3 1845 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 LNP1A1A4G5 178 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 TGFBR3LH3BV60 316 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 UBE2MP61081 183 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 ARF6P62330 175 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 RPL24P83731 157 aaKnown RBP3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A3Q01959 620 aa3.4□□□□□ -1.87
SCN1A-221ENST00000641996 SOHLH1Q5JUK2 328 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms