RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ATXN8OSP0DMR3 200 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 CCL4P13236 92 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 PCBP3P57721 371 aaKnown RBP17.22■□□□□ 0.35
CLN3-254ENST00000637050 NKAIN1Q4KMZ8 207 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 FAM98BQ52LJ0 330 aaKnown RBP17.22■□□□□ 0.35
CLN3-254ENST00000637050 VWA2Q5GFL6 755 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 CDCP2Q5VXM1 449 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 REEP3Q6NUK4 255 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 CBLL1Q75N03 491 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 GALNT10Q86SR1 603 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 GALNT12Q8IXK2 581 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 VWA5B2Q8N398 1253 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 METTL25Q8N6Q8 603 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 XAGE5Q8WWM1 108 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 PTCHD1Q96NR3 888 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 DGAT2Q96PD7 388 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 OR7D2Q96RA2 312 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 SEPHS2Q99611 448 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 CTRCQ99895 268 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 PKP2Q99959 881 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 YIPF4Q9BSR8 244 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 TGIF2Q9GZN2 237 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 EQTNQ9NQ60 294 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 TOR4AQ9NXH8 423 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 RPS6KA6Q9UK32 745 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 ZNF451Q9Y4E5 1061 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 V9GYQ6 96 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 NUP210LQ5VU65 1888 aa17.22■□□□□ 0.35
CLN3-254ENST00000637050 PRAMEF27A3QJZ7 478 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 B4E171 279 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 BCHEP06276 602 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 RAP2AP10114 183 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 S1PR1P21453 382 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 AQP1P29972 269 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 TSPAN7P41732 249 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 RHAGQ02094 409 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 ELOAQ14241 798 aaKnown RBP17.21■□□□□ 0.35
CLN3-254ENST00000637050 NKG7Q16617 165 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 CCDC157Q569K6 752 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 CRB2Q5IJ48 1285 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 EXOSC6Q5RKV6 272 aaKnown RBP17.21■□□□□ 0.35
CLN3-254ENST00000637050 CDC73Q6P1J9 531 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 LRRC74BQ6ZQY2 392 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 EIF3MQ7L2H7 374 aaKnown RBP17.21■□□□□ 0.35
CLN3-254ENST00000637050 TMEM102Q8N9M5 508 aaPredicted RBP17.21■□□□□ 0.35
CLN3-254ENST00000637050 C7orf57Q8NEG2 295 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 DOK4Q8TEW6 326 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 RIT1Q92963 219 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 RNF31Q96EP0 1072 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 TMEM19Q96HH6 336 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 RNF145Q96MT1 663 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 CMKLR1Q99788 373 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 MAGIXQ9H6Y5 334 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 AKAP7Q9P0M2 348 aaPredicted RBP17.21■□□□□ 0.35
CLN3-254ENST00000637050 P2RX2Q9UBL9 471 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 CTSFQ9UBX1 484 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 FER1L5A0AVI2 2057 aa17.21■□□□□ 0.35
CLN3-254ENST00000637050 TMX2-CTNND1H3BSU7 103 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 CASQ2O14958 399 aaPredicted RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 TIPRLO75663 272 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 CBX7O95931 251 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 HOXB6P17509 224 aaKnown RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 CLCN2P51788 898 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 DCDP81605 110 aaKnown RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 CHRNB3Q05901 458 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 STPG1Q5TH74 334 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 ERMP1Q7Z2K6 904 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 GLRX5Q86SX6 157 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 LRTOMTQ8WZ04 291 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 PYURFQ96I23 114 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 TMEM247A6NEH6 219 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 DUXAA6NLW8 204 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 C5orf58C9J3I9 102 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 CPNE3O75131 537 aaKnown RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 NME6O75414 186 aaPredicted RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 EFNA3P52797 238 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 FUT5Q11128 374 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 EXOSC7Q15024 291 aaKnown RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 SYPL1Q16563 259 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 MINDY4Q4G0A6 757 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 ZCCHC12Q6PEW1 402 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 PATL1Q86TB9 770 aaKnown RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 SLC47A1Q96FL8 570 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 OTUB1Q96FW1 271 aaPredicted RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 ZNF578Q96N58 590 aaPredicted RBP17.2■□□□□ 0.34
CLN3-254ENST00000637050 CHID1Q9BWS9 393 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 STRADBQ9C0K7 418 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 ADAP2Q9NPF8 381 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 KCNE3Q9Y6H6 103 aa17.2■□□□□ 0.34
CLN3-254ENST00000637050 OTOGLQ3ZCN5 2332 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 TMEM229AB2RXF0 380 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 SLC28A2O43868 658 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 PGM3O95394 542 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 ZNF682O95780 498 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 RECKO95980 971 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 FCGR1AP12314 374 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 DUSP8Q13202 625 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 TRIP6Q15654 476 aaKnown RBP17.19■□□□□ 0.34
CLN3-254ENST00000637050 ISXQ2M1V0 245 aa17.19■□□□□ 0.34
CLN3-254ENST00000637050 CYBRD1Q53TN4 286 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms