RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CYP27C1Q4G0S4 372 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 NKAIN1Q4KMZ8 207 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 MFSD12Q6NUT3 480 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 ST13P4Q8IZP2 240 aaPredicted RBP18.78■□□□□ 0.6
CLN3-250ENST00000636839 ADAMTS18Q8TE60 1221 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 RIT1Q92963 219 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 OR7D2Q96RA2 312 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 PHOX2BQ99453 314 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 CHID1Q9BWS9 393 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 ARMC1Q9NVT9 282 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 TEX51A0A1B0GUA7 166 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 PCNX2A6NKB5 2137 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 A8MUA0 341 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 M0QX08 132 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 RFPL3O75679 317 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 CBX7O95931 251 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 IFNA16P05015 189 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 GPIP06744 558 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 MYBPC3Q14896 1274 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 ZNF630Q2M218 657 aaPredicted RBP18.78■□□□□ 0.6
CLN3-250ENST00000636839 STPG1Q5TH74 334 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 ZNF385CQ66K41 422 aaPredicted RBP18.78■□□□□ 0.6
CLN3-250ENST00000636839 DHRS13Q6UX07 377 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 LRRC74BQ6ZQY2 392 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 TMEM102Q8N9M5 508 aaPredicted RBP18.78■□□□□ 0.6
CLN3-250ENST00000636839 TAMM41Q96BW9 452 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 SLC35A4Q96G79 324 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 OR1F2PQ96R84 312 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 RUBCNLQ9H714 662 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 A4GALTQ9NPC4 353 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 PTGFRNQ9P2B2 879 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 AK5Q9Y6K8 562 aa18.78■□□□□ 0.6
CLN3-250ENST00000636839 PLOD3O60568 738 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 IL10P22301 178 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 PEX2P28328 305 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 ETV5P41161 510 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 PGDP52209 483 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 MC2RQ01718 297 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 RHAGQ02094 409 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 MAP7Q14244 749 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 ZNF267Q14586 743 aaPredicted RBP18.77■□□□□ 0.6
CLN3-250ENST00000636839 IL11RAQ14626 422 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 FAM69BQ5VUD6 431 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 BHLHB9Q6PI77 547 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 VWA5B2Q8N398 1253 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 OR52E4Q8NGH9 312 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 ZNF675Q8TD23 568 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 SLC9A6Q92581 669 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 MOAP1Q96BY2 351 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 DGAT2Q96PD7 388 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 MS4A4EQ96PG1 132 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 VN1R1Q9GZP7 353 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 STOML1Q9UBI4 398 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 MKL2Q9ULH7 1088 aa18.77■□□□□ 0.6
CLN3-250ENST00000636839 SLC28A2O43868 658 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 RECKO95980 971 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 CCKBRP32239 447 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 STT3AP46977 705 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 KHKP50053 298 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 PCBP3P57721 371 aaKnown RBP18.76■□□□□ 0.59
CLN3-250ENST00000636839 RBBP4Q09028 425 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 CYBRD1Q53TN4 286 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 FAAH2Q6GMR7 532 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 FAM199XQ6PEV8 388 aaPredicted RBP18.76■□□□□ 0.59
CLN3-250ENST00000636839 PIP4P1Q86T03 277 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 SLCO6A1Q86UG4 719 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 GALNT12Q8IXK2 581 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 SMYD1Q8NB12 490 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 OR52R1Q8NGF1 315 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 MIPOL1Q8TD10 442 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 TPD52L3Q96J77 140 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 CDC6Q99741 560 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 PRRX2Q99811 253 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 ACTRT3Q9BYD9 372 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 PNO1Q9NRX1 252 aaKnown RBP18.76■□□□□ 0.59
CLN3-250ENST00000636839 IGKV3D-11A0A0A0MRZ8 115 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 CNOT3O75175 753 aaKnown RBP18.76■□□□□ 0.59
CLN3-250ENST00000636839 CHRM4P08173 479 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 ACP2P11117 423 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 UMPSP11172 480 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 TNFRSF1BP20333 461 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 RORAP35398 523 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 MAP4K2Q12851 820 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 TRIP10Q15642 601 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 TRIP6Q15654 476 aaKnown RBP18.76■□□□□ 0.59
CLN3-250ENST00000636839 DUSP5Q16690 384 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 MTX3Q5HYI7 312 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 REEP3Q6NUK4 255 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 ZNF321PQ8N8H1 164 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 GOLM1Q8NBJ4 401 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 PAPD5Q8NDF8 572 aaKnown RBP18.76■□□□□ 0.59
CLN3-250ENST00000636839 DEFB124Q8NES8 71 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 STT3BQ8TCJ2 826 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 CDS1Q92903 461 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 SLC47A1Q96FL8 570 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 PYURFQ96I23 114 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 SLC39A1Q9NY26 324 aa18.76■□□□□ 0.59
CLN3-250ENST00000636839 A0A087WV62 115 aa18.75■□□□□ 0.59
CLN3-250ENST00000636839 A0A1W2PNU3 283 aaPredicted RBP18.75■□□□□ 0.59
CLN3-250ENST00000636839 BLACEA4D250 179 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms