RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LSMEM2Q8N112 164 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 FAM86B1Q8N7N1 296 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.33□□□□□ -0.27
CPSF1-212ENST00000616140 PLEKHA6Q9Y2H5 1048 aa13.33□□□□□ -0.27
CPSF1-212ENST00000616140 MYH4Q9Y623 1939 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 C9J4A7 227 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 KLF8O95600 359 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 HNRNPA1P09651 372 aaKnown RBP eCLIP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ANXA3P12429 323 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ADRB3P13945 408 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 S1PR1P21453 382 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 GRK1Q15835 563 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 MORN1Q5T089 497 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 KCTD11Q693B1 232 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 PLBD1Q6P4A8 553 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 SMARCD2Q92925 531 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 CIDECQ96AQ7 238 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 NTMT1Q9BV86 223 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 CACNG6Q9BXT2 260 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 GMPR2Q9P2T1 348 aaKnown RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 SERTAD3Q9UJW9 196 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 FBXL3Q9UKT7 428 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ABCG2Q9UNQ0 655 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 RGPD5Q99666 1765 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 IFNA21P01568 189 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 DNASE1P24855 282 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 MICAQ29983 383 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 TMEM69Q5SWH9 247 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 RPL13AP3Q6NVV1 102 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 KCTD18Q6PI47 426 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 CLEC14AQ86T13 490 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 METTL7AQ9H8H3 244 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ALG5Q9Y673 324 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 NAV1Q8NEY1 1877 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 A0A1B0GVI7 797 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 A0A1W2PQL4 384 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 KLHL33A6NCF5 533 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 RNGTTO60942 597 aaKnown RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 SLC10A3P09131 477 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ATXN1LP0C7T5 689 aaKnown RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ADORA3P0DMS8 318 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 MAGEA3P43357 314 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 FAM43BQ6ZT52 329 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 KCTD9Q7L273 389 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 LILRA2Q8N149 483 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 CSNK1A1LQ8N752 337 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 NDNFQ8TB73 568 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF296Q8WUU4 475 aaPredicted RBP13.33□□□□□ -0.28
CPSF1-212ENST00000616140 FCAMRQ8WWV6 532 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 R3HDMLQ9H3Y0 253 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 SLC2A4RGQ9NR83 387 aa13.33□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF701M0R085 212 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-212ENST00000616140 UGDHO60701 494 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 RNH1P13489 461 aaKnown RBP13.32□□□□□ -0.28
CPSF1-212ENST00000616140 GRPRP30550 384 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 MAGEA8P43361 318 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 DHPSP49366 369 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-212ENST00000616140 ZNF33BQ06732 778 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 CST6Q15828 149 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 PUS10Q3MIT2 529 aaKnown RBP13.32□□□□□ -0.28
CPSF1-212ENST00000616140 LRRC37A5PQ49AS3 106 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 CPZQ66K79 652 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 POGLUT1Q8NBL1 392 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 OR5J2Q8NH18 312 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 THRSPQ92748 146 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 MROQ9BYG7 248 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 NUP50Q9UKX7 468 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 MAFFQ9ULX9 164 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 KNTC1P50748 2209 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 ANTXRLA6NF34 631 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 FRS3O43559 492 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 PPM1BO75688 479 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 CA5AP35218 305 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 PTGS2P35354 604 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 FNTBP49356 437 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 FAM189A2Q15884 450 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 NTRK2Q16620 822 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 PHF19Q5T6S3 580 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 GPAT4Q86UL3 456 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 OR51L1Q8NGJ5 315 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 GORASP2Q9H8Y8 452 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 RDH14Q9HBH5 336 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 TEX13DA0A0J9YY54 714 aaPredicted RBP13.32□□□□□ -0.28
CPSF1-212ENST00000616140 SOCS7O14512 581 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 SOX30O94993 753 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 APOC1P02654 83 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 SLC5A2P31639 672 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 GRIN2CQ14957 1233 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 METTL2BQ6P1Q9 378 aaKnown RBP13.32□□□□□ -0.28
CPSF1-212ENST00000616140 SERPINA11Q86U17 422 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 IGFN1Q86VF2 1251 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 THAP4Q8WY91 577 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 CMKLR1Q99788 373 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 G6PC3Q9BUM1 346 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 CNIH4Q9P003 139 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 PCDHGB2Q9Y5G2 931 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 CEPT1Q9Y6K0 416 aa13.32□□□□□ -0.28
CPSF1-212ENST00000616140 C21orf33P30042 268 aaPredicted RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 POLR2IP36954 125 aaKnown RBP13.31□□□□□ -0.28
CPSF1-212ENST00000616140 CTSCP53634 463 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms