RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 NUP43Q8NFH3 380 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 OR52R1Q8NGF1 315 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 M1APQ8TC57 530 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 ZFP90Q8TF47 636 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 THAP4Q8WY91 577 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 NCLNQ969V3 563 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 LRRC58Q96CX6 371 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 NEURL3Q96EH8 262 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 VMP1Q96GC9 406 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 OR10A5Q9H207 317 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 EPS8L2Q9H6S3 715 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 ZCCHC3Q9NUD5 404 aaKnown RBP13.36□□□□□ -0.27
UPF1-211ENST00000600868 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.36□□□□□ -0.27
UPF1-211ENST00000600868 SLC25A37Q9NYZ2 338 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 COPS7AQ9UBW8 275 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 FBXL4Q9UKA2 621 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 NCOR2Q9Y618 2525 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 CDC14CA4D256 554 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 NKX2-8O15522 239 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 EFSO43281 561 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 PRAMEF2O60811 474 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 KRT75O95678 551 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 KRT16P08779 473 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 PPIBP23284 216 aaKnown RBP13.35□□□□□ -0.27
UPF1-211ENST00000600868 SSTR4P31391 388 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 SLC37A1P57057 533 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 DUSP8Q13202 625 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 RUNDC3AQ59EK9 446 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 SAXO2Q658L1 398 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 ZCCHC12Q6PEW1 402 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 UNQ6494/PRO21346Q6UXR6 183 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 RNF111Q6ZNA4 994 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 C6orf120Q7Z4R8 191 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 ZNF321PQ8N8H1 164 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 APCDD1LQ8NCL9 501 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 SIMC1Q8NDZ2 872 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 OR5AK3PQ8NH89 298 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 GIMAP5Q96F15 307 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 MAGED4Q96JG8 741 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 ANKRD27Q96NW4 1050 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 MS4A4EQ96PG1 132 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 HOPXQ9BPY8 73 aaPredicted RBP13.35□□□□□ -0.27
UPF1-211ENST00000600868 NUDT9Q9BW91 350 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 ANKRA2Q9H9E1 313 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 TPT1P8Q9HAU6 139 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 IL1RL2Q9HB29 575 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 MMP25Q9NPA2 562 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 PRODH2Q9UF12 536 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 BCAP29Q9UHQ4 241 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 CFL2Q9Y281 166 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 PCSK5Q92824 1860 aa13.35□□□□□ -0.27
UPF1-211ENST00000600868 OR6C76A6NM76 312 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 B2RBV5 119 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 C1QTNF9BB2RNN3 333 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 CLIC1O00299 241 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 HNRNPCL1O60812 293 aaKnown RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 ATP5HO75947 161 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 C1QTNF9P0C862 333 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 CHI3L1P36222 383 aaPredicted RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 MAGEA8P43361 318 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 EMDP50402 254 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 CLCN2P51788 898 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 PRKAG1P54619 331 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 AP2B1P63010 937 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 VAC14Q08AM6 782 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 CDC20Q12834 499 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 TP53BP2Q13625 1128 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 BTBD16Q32M84 506 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 C8orf82Q6P1X6 216 aaPredicted RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 SZRD1Q7Z422 152 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 CLEC4FQ8N1N0 589 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 ZSCAN1Q8NBB4 408 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 OR8K3Q8NH51 312 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 C16orf52Q8NHV5 167 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 ELP5Q8TE02 316 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 HOXB13Q92826 284 aaPredicted RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 FER1L6-AS2Q96M78 137 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 GPATCH1Q9BRR8 931 aaKnown RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 ZNF160Q9HCG1 818 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 GPATCH2Q9NW75 528 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 NDE1Q9NXR1 346 aa13.34□□□□□ -0.27
UPF1-211ENST00000600868 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 ZNF223Q9UK11 482 aaPredicted RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 HEMK1Q9Y5R4 338 aaPredicted RBP13.34□□□□□ -0.27
UPF1-211ENST00000600868 FREM2Q5SZK8 3169 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 APC2O95996 2303 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 C15orf38-AP3S2A0A0A6YYH1 394 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 TMEM8BA6NDV4 472 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 TTC36A6NLP5 189 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 UNC5CO95185 931 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 HMGN2P05204 90 aaKnown RBP13.33□□□□□ -0.28
UPF1-211ENST00000600868 SLC6A2P23975 617 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 CPOXP36551 454 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 PRIM2P49643 509 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 RRADP55042 308 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 TXNL4AP83876 142 aaKnown RBP13.33□□□□□ -0.28
UPF1-211ENST00000600868 CAPRIN1Q14444 709 aaKnown RBP13.33□□□□□ -0.28
UPF1-211ENST00000600868 MYBPC3Q14896 1274 aa13.33□□□□□ -0.28
UPF1-211ENST00000600868 DCAF10Q5QP82 559 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms