RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 ZNHIT1O43257 154 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 PRKRAO75569 313 aaKnown RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 ATP6AP2O75787 350 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 DRD2P14416 443 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 ABCD3P28288 659 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 HSD17B3P37058 310 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 TLE4Q04727 773 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 CLCQ05315 142 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 MGAT2Q10469 447 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 TESK1Q15569 626 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 CEBPEQ15744 281 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 HSPB2Q16082 182 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 LETMD1Q6P1Q0 360 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 NUP54Q7Z3B4 507 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 PACS2Q86VP3 889 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 FAM13CQ8NE31 585 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 SELENOMQ8WWX9 145 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 TM4SF18Q96CE8 201 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 CCDC126Q96EE4 140 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 C11orf24Q96F05 449 aaPredicted RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 NSUN5Q96P11 429 aaKnown RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 GAL3ST4Q96RP7 486 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 PRDM14Q9GZV8 571 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 EHD3Q9NZN3 535 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF629Q9UEG4 869 aaPredicted RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 PRODH2Q9UF12 536 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 MCM8Q9UJA3 840 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 FOXD3Q9UJU5 478 aaPredicted RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF225Q9UK10 706 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 WBP11Q9Y2W2 641 aaKnown RBP13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 ITPR3Q14573 2671 aa13.3□□□□□ -0.28
SMARCE1-216ENST00000580419 EXOC1LA0A1B0GW35 172 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 WASHC1A8K0Z3 465 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 G3V3Y1 287 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SLITRK5O94991 958 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 EPPINO95925 133 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 PDYNP01213 254 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SNRPB2P08579 225 aaKnown RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 CELA3AP09093 270 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 RFPL3SP0C7P2 107 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 IMPDH1P20839 514 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 DRD5P21918 477 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 GPX3P22352 226 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 ATP5F1P24539 256 aaPredicted RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SSTR4P31391 388 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 CEACAM8P31997 349 aaPredicted RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 ARL1P40616 181 aaPredicted RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 CASP3P42574 277 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 PPICP45877 212 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 CDK9P50750 372 aaKnown RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 NR0B1P51843 470 aaKnown RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 PKNOX1P55347 436 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SPIN4Q56A73 249 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 UBAP2Q5T6F2 1119 aaKnown RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 FNDC7Q5VTL7 733 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 CES4AQ5XG92 561 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 VASNQ6EMK4 673 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SLC30A6Q6NXT4 461 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF585AQ6P3V2 769 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 LACC1Q8IV20 430 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 IFT20Q8IY31 132 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 ULK2Q8IYT8 1036 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 RPRMLQ8N4K4 120 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 CEP112Q8N8E3 955 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 IFT81Q8WYA0 676 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 DIO2Q92813 273 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 L3HYPDHQ96EM0 354 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 METTL2AQ96IZ6 378 aaKnown RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF681Q96N22 645 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 PPCSQ9HAB8 311 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 MAT2BQ9NZL9 334 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SPRR3Q9UBC9 169 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SLC12A4Q9UP95 1085 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 C15orf41Q9Y2V0 281 aa13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 SETD2Q9BYW2 2564 aaPredicted RBP13.29□□□□□ -0.28
SMARCE1-216ENST00000580419 A0A0G2JNJ9 132 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 CD8B2A6NJW9 211 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 POC1B-GALNT4F8VUJ3 575 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 SYT5O00445 386 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 PPM1BO75688 479 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 GOSR1O95249 250 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 GBAP04062 536 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 ENO1P06733 434 aaKnown RBP13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 ABCB1P08183 1280 aaPredicted RBP13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 IFI6P09912 130 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 CT62P0C5K7 136 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 GCAP28676 217 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 DEKP35659 375 aaKnown RBP13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 PRKAA2P54646 552 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 CRYZQ08257 329 aaKnown RBP13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 ZNF678Q5SXM1 525 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 PRAMEF20Q5VT98 475 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 TIGD3Q6B0B8 471 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 LIX1Q8N485 282 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 OR5M9Q8NGP3 310 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 LRRC46Q96FV0 321 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 LCORQ96JN0 433 aaPredicted RBP13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 RILPQ96NA2 401 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 TXLNGYQ9BZA5 131 aa13.28□□□□□ -0.28
SMARCE1-216ENST00000580419 STMN4Q9H169 189 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms