RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ZNF639Q9UID6 485 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 C3orf18Q9UK00 162 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 ERVK-19Q9WJR5 959 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 FAM220BPB1ANY3 271 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 C17orf105B2RV13 164 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 ARPC2O15144 300 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 PLOD3O60568 738 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 SERTAD2Q14140 314 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 MAP7Q14244 749 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 SERPINA11Q86U17 422 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 MICU2Q8IYU8 434 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 VWA5B2Q8N398 1253 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 OR52R1Q8NGF1 315 aa23.42■■□□□ 1.34
SHMT1-207ENST00000580002 AHCTF1Q8WYP5 2266 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 PTPRBP23467 1997 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 ELOVL7A1L3X0 281 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 H0YHG0 523 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 HMGN4O00479 90 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 PRKNO60260 465 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-207ENST00000580002 CLPSP04118 112 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 PPIBP23284 216 aaKnown RBP23.41■■□□□ 1.34
SHMT1-207ENST00000580002 SLC5A2P31639 672 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 EMP2P54851 167 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 GABREP78334 506 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 SPPL2CQ8IUH8 684 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 BHLHE22Q8NFJ8 381 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-207ENST00000580002 OR56A1Q8NGH5 318 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 C14orf105Q9NVL8 296 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 PTGFRNQ9P2B2 879 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 DTX4Q9Y2E6 619 aa23.41■■□□□ 1.34
SHMT1-207ENST00000580002 KLF7O75840 302 aaPredicted RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 BCAS2O75934 225 aaPredicted RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 ALBP02768 609 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 MAN2A2P49641 1150 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 RPS18P62269 152 aaKnown RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 PRR5P85299 388 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 VAC14Q08AM6 782 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 FLOT2Q14254 428 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 MAPK11Q15759 364 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 GLYATQ6IB77 296 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 PTRH1Q86Y79 214 aaKnown RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 FIG4Q92562 907 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 FKBP10Q96AY3 582 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 C8orf44Q96CB5 159 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 REXO5Q96IC2 774 aaKnown RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 CRB3Q9BUF7 120 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 BCAP29Q9UHQ4 241 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 GPN3Q9UHW5 284 aaPredicted RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 PADI1Q9ULC6 663 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 SPTBN2O15020 2390 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 ALOX12BO75342 701 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 PSMG1O95456 288 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 UMODP07911 640 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 ACTR3P61158 418 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 NCF4Q15080 339 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 FXNQ16595 210 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 VMACQ2NL98 169 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 MFSD12Q6NUT3 480 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 TMPRSS7Q7RTY8 843 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 ANKRD37Q7Z713 158 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 SLC44A2Q8IWA5 706 aaPredicted RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 CACTIN-AS1Q8N1I8 211 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 ENDOVQ8N8Q3 282 aaKnown RBP23.4■■□□□ 1.34
SHMT1-207ENST00000580002 SLC16A11Q8NCK7 471 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 CT55Q8WUE5 264 aa23.4■■□□□ 1.34
SHMT1-207ENST00000580002 A0A087WV62 115 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 GCM2O75603 506 aaPredicted RBP23.39■■□□□ 1.33
SHMT1-207ENST00000580002 GGT1P19440 569 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 DSTNP60981 165 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 EEF1A2Q05639 463 aaKnown RBP23.39■■□□□ 1.33
SHMT1-207ENST00000580002 TMEM164Q5U3C3 297 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 NFKBIDQ8NI38 313 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 FAM110BQ8TC76 370 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 XAGE5Q8WWM1 108 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 JADE3Q92613 823 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 SLC35A4Q96G79 324 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 SENP5Q96HI0 755 aaPredicted RBP23.39■■□□□ 1.33
SHMT1-207ENST00000580002 SLC46A1Q96NT5 459 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 OR7D2Q96RA2 312 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 POLR1BQ9H9Y6 1135 aa23.39■■□□□ 1.33
SHMT1-207ENST00000580002 FAF1Q9UNN5 650 aaPredicted RBP23.39■■□□□ 1.33
SHMT1-207ENST00000580002 PTRH2Q9Y3E5 179 aaKnown RBP23.39■■□□□ 1.33
SHMT1-207ENST00000580002 DDAH2O95865 285 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 ACP2P11117 423 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 TCN2P20062 427 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 EMDP50402 254 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 GCNT6Q5T4J0 391 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 DHFR2Q86XF0 187 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 MOAP1Q96BY2 351 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 CORO2BQ9UQ03 480 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 SNX13Q9Y5W8 968 aa23.38■■□□□ 1.33
SHMT1-207ENST00000580002 CXCR6O00574 342 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 GSTA4O15217 222 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 F8A1P23610 371 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 AQP1P29972 269 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 PRIM2P49643 509 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 FUT5Q11128 374 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 FUT7Q11130 342 aa23.37■■□□□ 1.33
SHMT1-207ENST00000580002 TRAP1Q12931 704 aaKnown RBP23.37■■□□□ 1.33
SHMT1-207ENST00000580002 BNIP2Q12982 314 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms