RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 EXOSC7Q15024 291 aaKnown RBP17.84■□□□□ 0.45
SS18-208ENST00000577751 TTMPQ5BVD1 217 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 CLEC18BQ6UXF7 455 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 DND1Q8IYX4 353 aaKnown RBP17.84■□□□□ 0.45
SS18-208ENST00000577751 FAM9CQ8IZT9 166 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 CLEC18CQ8NCF0 446 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 OR52R1Q8NGF1 315 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 RAB3IL1Q8TBN0 382 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 BBS4Q96RK4 519 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 REEP4Q9H6H4 257 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 SH2D2AQ9NP31 389 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 BCAP29Q9UHQ4 241 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 DTX4Q9Y2E6 619 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 ESPL1Q14674 2120 aa17.84■□□□□ 0.45
SS18-208ENST00000577751 PEX1O43933 1283 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 PLOD3O60568 738 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 SLITRK5O94991 958 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 FBXO45P0C2W1 286 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 MAPK1P28482 360 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 SRSF11Q05519 484 aaKnown RBP17.83■□□□□ 0.44
SS18-208ENST00000577751 SRSF1Q07955 248 aaKnown RBP eCLIP17.83■□□□□ 0.44
SS18-208ENST00000577751 SMU1Q2TAY7 513 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 FHL5Q5TD97 284 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 HLA-DQA1Q5Y7H0 255 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 TAGAPQ8N103 731 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 CPSF7Q8N684 471 aaKnown RBP17.83■□□□□ 0.44
SS18-208ENST00000577751 POGLUT1Q8NBL1 392 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 KAT2AQ92830 837 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 GFM2Q969S9 779 aaKnown RBP17.83■□□□□ 0.44
SS18-208ENST00000577751 TUBGCP3Q96CW5 907 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 SPACA9Q96E40 222 aaPredicted RBP17.83■□□□□ 0.44
SS18-208ENST00000577751 AMDHD1Q96NU7 426 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 GLIPR2Q9H4G4 154 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 ANKRA2Q9H9E1 313 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 DEPPQ9NTK1 212 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 PNPOQ9NVS9 261 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 THAP1Q9NVV9 213 aa17.83■□□□□ 0.44
SS18-208ENST00000577751 WISP2O76076 250 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 LRATO95237 230 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 PRPS2P11908 318 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 FRKP42685 505 aaPredicted RBP17.82■□□□□ 0.44
SS18-208ENST00000577751 MEOX1P50221 254 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 NCBP2P52298 156 aaKnown RBP eCLIP17.82■□□□□ 0.44
SS18-208ENST00000577751 PDCD2Q16342 344 aaPredicted RBP17.82■□□□□ 0.44
SS18-208ENST00000577751 NTRK2Q16620 822 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 EIF2S3LQ2VIR3 472 aaKnown RBP17.82■□□□□ 0.44
SS18-208ENST00000577751 ZNF385BQ569K4 471 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 RNFT1Q5M7Z0 435 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 IL23RQ5VWK5 629 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 SIAH3Q8IW03 269 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 LIX1Q8N485 282 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 FNDC5Q8NAU1 212 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 ZFP62Q8NB50 900 aaPredicted RBP17.82■□□□□ 0.44
SS18-208ENST00000577751 OR7G2Q8NG99 324 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 PAQR8Q8TEZ7 354 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 MTERF3Q96E29 417 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 NXF5Q9H1B4 397 aaKnown RBP17.82■□□□□ 0.44
SS18-208ENST00000577751 PRODH2Q9UF12 536 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 EXPH5Q8NEV8 1989 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 MYO18BQ8IUG5 2567 aa17.82■□□□□ 0.44
SS18-208ENST00000577751 ZGRF1Q86YA3 2104 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 RP1L1Q8IWN7 2480 aaPredicted RBP17.81■□□□□ 0.44
SS18-208ENST00000577751 A0A087WV62 115 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 PLOD2O00469 737 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 AKAP10O43572 662 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 IFI6P09912 130 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 CNR1P21554 472 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 DRD5P21918 477 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 NTSP30990 170 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 PPICP45877 212 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 GPR85P60893 370 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 ALDH6A1Q02252 535 aaKnown RBP17.81■□□□□ 0.44
SS18-208ENST00000577751 EMX2Q04743 252 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 MAD2L1Q13257 205 aaPredicted RBP17.81■□□□□ 0.44
SS18-208ENST00000577751 ATG16L1Q676U5 607 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 ANKRD26P1Q6NSI1 321 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 TRIM42Q8IWZ5 723 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 CLHC1Q8NHS4 586 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 PPCDCQ96CD2 204 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 LCORQ96JN0 433 aaPredicted RBP17.81■□□□□ 0.44
SS18-208ENST00000577751 C1orf50Q9BV19 199 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 ITPAQ9BY32 194 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 MANSC1Q9H8J5 431 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 AKTIPQ9H8T0 292 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 ASIC5Q9NY37 505 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 ATP6V1HQ9UI12 483 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 NPFFR2Q9Y5X5 522 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 SVILO95425 2214 aa17.81■□□□□ 0.44
SS18-208ENST00000577751 PINLYPA6NC86 204 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 KLF11O14901 512 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 CCL3P10147 92 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 ABCD3P28288 659 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 NRG3P56975 720 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 DCAF7P61962 342 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 OCRLQ01968 901 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 ELOAQ14241 798 aaKnown RBP17.8■□□□□ 0.44
SS18-208ENST00000577751 PTGR1Q14914 329 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 SLC22A10Q63ZE4 541 aa17.8■□□□□ 0.44
SS18-208ENST00000577751 R3HCC1LQ7Z5L2 792 aaKnown RBP17.8■□□□□ 0.44
SS18-208ENST00000577751 LRRC34Q8IZ02 419 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms