RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 MAT2AP31153 395 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 PTGER1P34995 402 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 FEN1P39748 380 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 TSFMP43897 325 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 ANXA11P50995 505 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 PPP5CP53041 499 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 ADPRHP54922 357 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 TARDBPQ13148 414 aaKnown RBP eCLIP9.5□□□□□ -0.89
VPS53-220ENST00000576149 GNA13Q14344 377 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 ZNF750Q32MQ0 723 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 C18orf63Q68DL7 685 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 ZNF425Q6IV72 752 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 OLIG3Q7RTU3 272 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SNX29P2Q8IUI4 249 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 LILRB2Q8N423 598 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 AMER2Q8N7J2 671 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 MFSD9Q8NBP5 474 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SRFBP1Q8NEF9 429 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 KBTBD8Q8NFY9 601 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 MOAP1Q96BY2 351 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 OTUB1Q96FW1 271 aaPredicted RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 MGLLQ99685 303 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 TRMT61BQ9BVS5 477 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 SLC6A17Q9H1V8 727 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 KIR3DX1Q9H7L2 352 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 FGF22Q9HCT0 170 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 FBXW2Q9UKT8 454 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SLC9A8Q9Y2E8 581 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 LOC100506127A0A0U1RQW1 187 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SCAMP1O15126 338 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 NME6O75414 186 aaPredicted RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 DNTTP04053 509 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 ALPPL2P10696 532 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 F3P13726 295 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 CERS1P27544 350 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 CD40LGP29965 261 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 CMPK1P30085 196 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 NTSR1P30989 418 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 PBX2P40425 430 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 ALDH6A1Q02252 535 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 RELAQ04206 551 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 COX10Q12887 443 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 EIF2B5Q13144 721 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 LASP1Q14847 261 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 MED22Q15528 200 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SOWAHCQ53LP3 525 aaPredicted RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 TMEM196Q5HYL7 178 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 MEDAGQ5VYS4 303 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SLC48A1Q6P1K1 146 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 PODNL1Q6PEZ8 512 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 CASP12Q6UXS9 341 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 CD300LDQ6UXZ3 194 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 MINDY2Q8NBR6 621 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 OR56A1Q8NGH5 318 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 OR6T1Q8NGN1 323 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 SERINC2Q96SA4 455 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 YIPF4Q9BSR8 244 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 FNDC11Q9BVV2 318 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 RNF167Q9H6Y7 350 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 CCDC59Q9P031 241 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 APOBEC3BQ9UH17 382 aaKnown RBP9.5□□□□□ -0.89
VPS53-220ENST00000576149 DOLKQ9UPQ8 538 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 ENTPD4Q9Y227 616 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 HEBP2Q9Y5Z4 205 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 COLEC10Q9Y6Z7 277 aa9.5□□□□□ -0.89
VPS53-220ENST00000576149 DOCK8Q8NF50 2099 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3DA0A087WVF3 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3IA0A087WXS9 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3EA0A087X179 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3KA0A087X1G2 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 A0A0G2JPF8 293 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 LINC00854A0A1B0GVQ3 168 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3FA6NER0 549 aaPredicted RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 HNRNPCL2B2RXH8 293 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 HNRNPCL3B7ZW38 293 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3LB9A6J9 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 CASC3O15234 703 aaKnown RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 SLC31A1O15431 190 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 LINC01565O15544 149 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 PROM1O43490 865 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 KDM1AO60341 852 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 FHP07954 510 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3HP0C7X1 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 C8orf89P0DMQ9 161 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 HNRNPCL4P0DMR1 293 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 DBTP11182 482 aaKnown RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 LAMP2P13473 410 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 CSNK2A2P19784 350 aaPredicted RBP9.49□□□□□ -0.89
VPS53-220ENST00000576149 CDH3P22223 829 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TGM1P22735 817 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 MAN2A2P49641 1150 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 RAB8AP61006 207 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 RHAGQ02094 409 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 DOC2BQ14184 412 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 CEBPEQ15744 281 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TMEM95Q3KNT9 176 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 PRAMEF8Q5VWM4 474 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 PRAMEF7Q5VXH5 474 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3GQ6DHY5 549 aa9.49□□□□□ -0.89
VPS53-220ENST00000576149 TBC1D3CQ6IPX1 549 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms