RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 LRRC69Q6ZNQ3 347 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 CPLX4Q7Z7G2 160 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 SAMD14Q8IZD0 417 aaPredicted RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 FAM9CQ8IZT9 166 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 C10orf111Q8N326 155 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 VWA5B2Q8N398 1253 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 GALNT16Q8N428 558 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 TMEM102Q8N9M5 508 aaPredicted RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 C16orf52Q8NHV5 167 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 BRIX1Q8TDN6 353 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 OR5P2Q8WZ92 322 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 DAZLQ92904 295 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 ZBED6CLQ96FA7 236 aaPredicted RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 RBM18Q96H35 190 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 VSTM2LQ96N03 204 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 BBS4Q96RK4 519 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 OR8D2Q9GZM6 311 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 PAIP1Q9H074 479 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 IKZF5Q9H5V7 419 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 FAM120CQ9NX05 1096 aaKnown RBP8.62□□□□□ -1.03
VPS35-211ENST00000569950 CCDC167Q9P0B6 97 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 MAP10Q9P2G4 905 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 PSME2Q9UL46 239 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 ENTPD4Q9Y227 616 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 CLCA3PQ9Y6N3 262 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 FAM208BQ5VWN6 2430 aa8.62□□□□□ -1.03
VPS35-211ENST00000569950 COL6A6A6NMZ7 2263 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 NCKAP5O14513 1909 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 TRBV11-1A0A0K0K1C0 115 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 A0A1W2PP18 115 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 SLC22A2O15244 555 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 OR10H2O60403 315 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 IL6P05231 212 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 CT45A8P0DMV1 189 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 CT45A9P0DMV2 189 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 NTSP30990 170 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 S100A3P33764 101 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 CD97P48960 835 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 PGDP52209 483 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 RNF4P78317 190 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 PSG6Q00889 435 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 AIMP2Q13155 320 aaKnown RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 MAPK11Q15759 364 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 EXT1Q16394 746 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 ST3GAL2Q16842 350 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 CT45A2Q5DJT8 189 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 LRIF1Q5T3J3 769 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 ZNF468Q5VIY5 522 aaPredicted RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 BROXQ5VW32 411 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 FCRLBQ6BAA4 426 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 IGFL2Q6UWQ7 119 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 TMEM64Q6YI46 380 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 MSANTD1Q6ZTZ1 278 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 WDR53Q7Z5U6 358 aaPredicted RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 DPP10Q8N608 796 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 FITM2Q8N6M3 262 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 FDCSPQ8NFU4 85 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 OR52R1Q8NGF1 315 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 OR8K3Q8NH51 312 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 EXTL1Q92935 676 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 NTNG2Q96CW9 530 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 ERP27Q96DN0 273 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 SPDL1Q96EA4 605 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 VMP1Q96GC9 406 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 THOC3Q96J01 351 aaKnown RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 OR52E6Q96RD3 313 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 LMF1Q96S06 567 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 CNPPD1Q9BV87 410 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 WWTR1Q9GZV5 400 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 NSRP1Q9H0G5 558 aaKnown RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 OR10A5Q9H207 317 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 LIN28AQ9H9Z2 209 aaKnown RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 ATP13A2Q9NQ11 1180 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 ATAD3AQ9NVI7 634 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 WDR70Q9NW82 654 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 TAS2R9Q9NYW1 312 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 TRIM33Q9UPN9 1127 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 MAPRE3Q9UPY8 281 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 GPR55Q9Y2T6 319 aaPredicted RBP8.61□□□□□ -1.03
VPS35-211ENST00000569950 ARL2BPQ9Y2Y0 163 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 GMEB1Q9Y692 573 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 NINQ8N4C6 2090 aa8.61□□□□□ -1.03
VPS35-211ENST00000569950 PRAMEF27A3QJZ7 478 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 NR5A2O00482 541 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 PEX12O00623 359 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 SLITRK5O94991 958 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 ITGB2P05107 769 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 GSNP06396 782 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 ZCCHC18P0CG32 403 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 ACP2P11117 423 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 TNNI3P19429 210 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 ADSLP30566 484 aaPredicted RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 ST13P50502 369 aaKnown RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 MANFP55145 182 aaKnown RBP8.6□□□□□ -1.03
VPS35-211ENST00000569950 CORO7P57737 925 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 MLF1P58340 268 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 RAPSNQ13702 412 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 MYBPC3Q14896 1274 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 RPS6KA2Q15349 733 aa8.6□□□□□ -1.03
VPS35-211ENST00000569950 SAXO2Q658L1 398 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms