RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TRHRP34981 398 aaPredicted RBP18.09■□□□□ 0.49
CLN3-225ENST00000566824 SOX3P41225 446 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 WNT3P56703 355 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 PGS1Q32NB8 556 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 PIGGQ5H8A4 983 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 CPTPQ5TA50 214 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 C6orf163Q5TEZ5 329 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 CGB2Q6NT52 195 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 LYPD8Q6UX82 237 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 R3HCC1LQ7Z5L2 792 aaKnown RBP18.09■□□□□ 0.49
CLN3-225ENST00000566824 NUBPLQ8TB37 319 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 PNPLA2Q96AD5 504 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 MAGED4Q96JG8 741 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 UTP23Q9BRU9 249 aaKnown RBP18.09■□□□□ 0.49
CLN3-225ENST00000566824 ITPAQ9BY32 194 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLN3-225ENST00000566824 ERVK-11Q9UQG0 969 aa18.09■□□□□ 0.49
CLN3-225ENST00000566824 YARS2Q9Y2Z4 477 aaKnown RBP18.09■□□□□ 0.49
CLN3-225ENST00000566824 C2orf92A0A1B0GVN3 265 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 OR6C76A6NM76 312 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 EIF4E1BA6NMX2 242 aaKnown RBP18.08■□□□□ 0.49
CLN3-225ENST00000566824 B8ZZF3 427 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 SUV39H1O43463 412 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 PLOD3O60568 738 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 MDH1P40925 334 aaKnown RBP18.08■□□□□ 0.49
CLN3-225ENST00000566824 HLCSP50747 726 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 SSR4P51571 173 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 OC90Q02509 493 aaPredicted RBP18.08■□□□□ 0.49
CLN3-225ENST00000566824 SF3A3Q12874 501 aaKnown RBP eCLIP18.08■□□□□ 0.49
CLN3-225ENST00000566824 OR1C1Q15619 314 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 NNATQ16517 81 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 OR4F3Q6IEY1 312 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 SLC29A4Q7RTT9 530 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 OR5L2Q8NGL0 311 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 CEP70Q8NHQ1 597 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 ELP4Q96EB1 424 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 DPY30Q9C005 99 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 NPHS2Q9NP85 383 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 FGFR1OP2Q9NVK5 253 aa18.08■□□□□ 0.49
CLN3-225ENST00000566824 E9PBE3 544 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 UPK1AO00322 258 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 FCHO1O14526 889 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 TGDSO95455 350 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 NR0B1P51843 470 aaKnown RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 GYS2P54840 703 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 MANFP55145 182 aaKnown RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 SRSF11Q05519 484 aaKnown RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 ZNF169Q14929 603 aaPredicted RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 MDGA2Q7Z553 956 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 WDR53Q7Z5U6 358 aaPredicted RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 DUSP26Q9BV47 211 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 TRIM4Q9C037 500 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 NXF5Q9H1B4 397 aaKnown RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 EPN3Q9H201 632 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 CCDC134Q9H6E4 229 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 TRIM45Q9H8W5 580 aaPredicted RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 TCF7L2Q9NQB0 619 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 SIRT3Q9NTG7 399 aaPredicted RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 ACSS1Q9NUB1 689 aaPredicted RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 SDAD1Q9NVU7 687 aaKnown RBP eCLIP18.07■□□□□ 0.48
CLN3-225ENST00000566824 LRFN1Q9P244 771 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 ABI3Q9P2A4 366 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 DCTN4Q9UJW0 460 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 NTNG1Q9Y2I2 539 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 PCDHGA10Q9Y5H3 936 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 HEMK1Q9Y5R4 338 aaPredicted RBP18.07■□□□□ 0.48
CLN3-225ENST00000566824 SHANK1Q9Y566 2161 aa18.07■□□□□ 0.48
CLN3-225ENST00000566824 NBASA2RRP1 2371 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 A0A1W2PRB8 838 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 PLOD2O00469 737 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 SCN2BO60939 215 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 PSMG1O95456 288 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 C6orf47O95873 294 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 CD1EP15812 388 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 RPL3P39023 403 aaKnown RBP18.06■□□□□ 0.48
CLN3-225ENST00000566824 ZFP36L2P47974 494 aaKnown RBP18.06■□□□□ 0.48
CLN3-225ENST00000566824 DGKQP52824 942 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 MLLT10P55197 1068 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 TLR1Q15399 786 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 SPANXN4Q5MJ08 99 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 IL20RBQ6UXL0 311 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 CAMKMTQ7Z624 323 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 PRR22Q8IZ63 422 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 CLECL1Q8IZS7 167 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 OR2L13Q8N349 312 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 ZBED6CLQ96FA7 236 aaPredicted RBP18.06■□□□□ 0.48
CLN3-225ENST00000566824 CLMPQ9H6B4 373 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 KLHL1Q9NR64 748 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 MAP10Q9P2G4 905 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 ANAPC2Q9UJX6 822 aa18.06■□□□□ 0.48
CLN3-225ENST00000566824 C19orf53Q9UNZ5 99 aaPredicted RBP18.06■□□□□ 0.48
CLN3-225ENST00000566824 A0A087WV62 115 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 UBDO15205 165 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 PRAMEF2O60811 474 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 CASRP41180 1078 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 CYB561P49447 251 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 CORO7P57737 925 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 DESI1Q6ICB0 168 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 NPSR1Q6W5P4 371 aa18.05■□□□□ 0.48
CLN3-225ENST00000566824 ACAD11Q709F0 780 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms