RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TIMM22Q9Y584 194 aa15.49■□□□□ 0.07
CLK3-210ENST00000563112 HRH3Q9Y5N1 445 aa15.49■□□□□ 0.07
CLK3-210ENST00000563112 LIPGQ9Y5X9 500 aa15.49■□□□□ 0.07
CLK3-210ENST00000563112 G3V2L1 256 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 COPEO14579 308 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 PROCP04070 461 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 SNRPB2P08579 225 aaKnown RBP15.48■□□□□ 0.07
CLK3-210ENST00000563112 IL3P08700 152 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 CELA3AP09093 270 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 NAGAP17050 411 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 S1PR1P21453 382 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 GPX3P22352 226 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 CRHR1P34998 444 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 GSTM5P46439 218 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 HTR6P50406 440 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 FBXW4P57775 412 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 DCAF7P61962 342 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 HMGCS1Q01581 520 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 BTKQ06187 659 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 MGAT2Q10469 447 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 EMC4Q5J8M3 183 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 SPDYAQ5MJ70 313 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 FAM219BQ5XKK7 198 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 ZNF585AQ6P3V2 769 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 LIX1Q8N485 282 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 ADCY4Q8NFM4 1077 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 RDH11Q8TC12 318 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 SPPL2AQ8TCT8 520 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 ZNF597Q96LX8 424 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 KCNA7Q96RP8 456 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 ZNF703Q9H7S9 590 aaPredicted RBP15.48■□□□□ 0.07
CLK3-210ENST00000563112 HEY2Q9UBP5 337 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 PRODH2Q9UF12 536 aa15.48■□□□□ 0.07
CLK3-210ENST00000563112 SERTM1A2A2V5 107 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 FOXO6A8MYZ6 492 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 PLIN3O60664 434 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 CDH16O75309 829 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 BCAS2O75934 225 aaPredicted RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 SNX4O95219 450 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 LRATO95237 230 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 HOXD4P09016 255 aaPredicted RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 RFPL3SP0C7P2 107 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 CPA3P15088 417 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 ACVR2AP27037 513 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 CHRNB4P30926 498 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 TIA1P31483 386 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLK3-210ENST00000563112 MASP1P48740 699 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 NAGLUP54802 743 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 DNAJB13P59910 316 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 PMPCAQ10713 525 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 EXOSC7Q15024 291 aaKnown RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 CDSNQ15517 529 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 IMPG1Q17R60 797 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 GALNT18Q6P9A2 607 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 SH2D5Q6ZV89 423 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 GDF7Q7Z4P5 450 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 PACS2Q86VP3 889 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 SRRM1Q8IYB3 904 aaKnown RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 PRR22Q8IZ63 422 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 MARVELD2Q8N4S9 558 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 C16orf78Q8WTQ4 265 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 HSPBAP1Q96EW2 488 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 CNRIP1Q96F85 164 aaPredicted RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 APIPQ96GX9 242 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 LCORQ96JN0 433 aaPredicted RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 ZNF681Q96N22 645 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 SHCBP1LQ9BZQ2 653 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 NXF5Q9H1B4 397 aaKnown RBP15.47■□□□□ 0.07
CLK3-210ENST00000563112 PROK2Q9HC23 129 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 ACKR4Q9NPB9 350 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 ALKBH4Q9NXW9 302 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 ZNF639Q9UID6 485 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 MID2Q9UJV3 735 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 RNF6Q9Y252 685 aa15.47■□□□□ 0.07
CLK3-210ENST00000563112 LRRC3CA6NJW4 275 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 ACOX3O15254 700 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 WDR1O75083 606 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 TRIM3O75382 744 aaPredicted RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 ANXA4P09525 319 aaPredicted RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 PRF1P14222 555 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 GDF1P27539 372 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 ABCD3P28288 659 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 RAE1P78406 368 aaKnown RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 FAM180BQ6P0A1 224 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 SCIMPQ6UWF3 145 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 B3GNT6Q6ZMB0 384 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 NUP54Q7Z3B4 507 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 CCDC116Q8IYX3 515 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 OR52R1Q8NGF1 315 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 OR10Q1Q8NGQ4 319 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 ZNF675Q8TD23 568 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 EPS8L3Q8TE67 593 aaKnown RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 EXOSC8Q96B26 276 aaKnown RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 CTHRC1Q96CG8 243 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 ERP27Q96DN0 273 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 RILPQ96NA2 401 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 ITPAQ9BY32 194 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 ANGPTL4Q9BY76 406 aa15.46■□□□□ 0.07
CLK3-210ENST00000563112 IQCGQ9H095 443 aaKnown RBP15.46■□□□□ 0.07
CLK3-210ENST00000563112 RRAGDQ9NQL2 400 aaPredicted RBP15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms