RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FBLIM1Q8WUP2 373 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 XAGE5Q8WWM1 108 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 SLC38A4Q969I6 547 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 TAMM41Q96BW9 452 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CNRIP1Q96F85 164 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 RBM18Q96H35 190 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 HRASLS5Q96KN8 279 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 COL21A1Q96P44 957 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 TSC22D3Q99576 134 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ELF4Q99607 663 aaPredicted RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 DGCR6LQ9BY27 220 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 TPSD1Q9BZJ3 242 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 GRIP2Q9C0E4 1043 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 NDEL1Q9GZM8 345 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 MIR1-1HGQ9H1L0 117 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 CXorf56Q9H5V9 222 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 GPATCH2Q9NW75 528 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 SOHLH2Q9NX45 425 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 IMPAD1Q9NX62 359 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 PTTG2Q9NZH5 202 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 KCMF1Q9P0J7 381 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 SERTAD3Q9UJW9 196 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 FBXO4Q9UKT5 387 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 NDRG4Q9ULP0 352 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 PCDHGB1Q9Y5G3 927 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 GMPPBQ9Y5P6 360 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 LYVE1Q9Y5Y7 322 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 RANBP2P49792 3224 aaKnown RBP7.07□□□□□ -1.28
VPS39-204ENST00000561818 CACNA1IQ9P0X4 2223 aa7.07□□□□□ -1.28
VPS39-204ENST00000561818 ANTXRLA6NF34 631 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 TMEM150CB9EJG8 249 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 K7ESF4 209 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 DLGAP1O14490 977 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 CTNSO60931 367 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 OR5F1O95221 314 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 SNAP29O95721 258 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 CER1O95813 267 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 EML2O95834 649 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 LGI1O95970 557 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 EIF2S1P05198 315 aaKnown RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 JUNBP17275 347 aaPredicted RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 CD247P20963 164 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 AQP1P29972 269 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 PPM1FP49593 454 aaPredicted RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 MYBPC1Q00872 1141 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.06□□□□□ -1.28
VPS39-204ENST00000561818 STX4Q12846 297 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 NPRL3Q12980 569 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 DYNC1I2Q13409 638 aaKnown RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 GAS6Q14393 721 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 LASP1Q14847 261 aaKnown RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 TPRG1LQ5T0D9 272 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 TMEM107Q6UX40 140 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 LINC00299Q6ZSB3 139 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 VTCN1Q7Z7D3 282 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 ZNF605Q86T29 641 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 PLD3Q8IV08 490 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 GALNT12Q8IXK2 581 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 CCDC116Q8IYX3 515 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 RNF113BQ8IZP6 322 aaKnown RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 DEFB123Q8N688 67 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 FAM86B1Q8N7N1 296 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 FAM181AQ8N9Y4 354 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 ZNF527Q8NB42 609 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 KCT2Q8NC54 265 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 C1orf216Q8TAB5 229 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 MYDGFQ969H8 173 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 MAL2Q969L2 176 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 C10orf90Q96M02 699 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 DGAT2Q96PD7 388 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 OR7D2Q96RA2 312 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 FNDC11Q9BVV2 318 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 SORBS1Q9BX66 1292 aaKnown RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 TRIM4Q9C037 500 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 HOXD1Q9GZZ0 328 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 KLHL31Q9H511 634 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 Q9N2J8 555 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 SLAMF7Q9NQ25 335 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 WDR70Q9NW82 654 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 IRAK4Q9NWZ3 460 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 TESQ9UGI8 421 aaKnown RBP7.06□□□□□ -1.28
VPS39-204ENST00000561818 ACSL6Q9UKU0 697 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 ABCG2Q9UNQ0 655 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 USP22Q9UPT9 525 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 TMEM5Q9Y2B1 443 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 CA5BQ9Y2D0 317 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 SH3GLB1Q9Y371 365 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 NAALAD2Q9Y3Q0 740 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 WDR45Q9Y484 360 aa7.06□□□□□ -1.28
VPS39-204ENST00000561818 EFCAB10A6NFE3 127 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 hCG_2039718K7EN88 272 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CYR61O00622 381 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CPNE6O95741 557 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ANGPTL1O95841 491 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 MT-ND1P03886 318 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 SYPP08247 313 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 CD63P08962 238 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 SMIM18P0DKX4 95 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 OR12D1P0DN82 309 aa7.05□□□□□ -1.28
VPS39-204ENST00000561818 ST6GAL1P15907 406 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms