RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 WDR53Q7Z5U6 358 aaPredicted RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 PACS2Q86VP3 889 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 DMRTC2Q8IXT2 367 aaPredicted RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 IFT20Q8IY31 132 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 CCDC116Q8IYX3 515 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 VWA5B2Q8N398 1253 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 KLHL29Q96CT2 875 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 ZNF597Q96LX8 424 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 TMEM237Q96Q45 408 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 RHOXF2Q9BQY4 288 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 C1QTNF3Q9BXJ4 246 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 ANGPTL4Q9BY76 406 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 BRF2Q9HAW0 419 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 NMRK1Q9NWW6 199 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 MAT2BQ9NZL9 334 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 VPS29Q9UBQ0 182 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 B4GALT7Q9UBV7 327 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 TRPS1Q9UHF7 1281 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 PSME2Q9UL46 239 aa9.37□□□□□ -0.91
LDLR-214ENST00000560628 INTS1Q8N201 2190 aaKnown RBP9.37□□□□□ -0.91
LDLR-214ENST00000560628 FOXO6A8MYZ6 492 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 KDM4EB2RXH2 506 aaPredicted RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 GNB5O14775 395 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 RIPK2O43353 540 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 NME6O75414 186 aaPredicted RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 SNX4O95219 450 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 KRT6AP02538 564 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 KRT6BP04259 564 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ABCB1P08183 1280 aaPredicted RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 ABHD2P08910 425 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 HOXD4P09016 255 aaPredicted RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 PYGBP11216 843 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 GABRA1P14867 456 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 PCSK2P16519 638 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 CAPN3P20807 821 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 IMPDH1P20839 514 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ATP5F1P24539 256 aaPredicted RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 ABCD3P28288 659 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 HMOX2P30519 316 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 SOX18P35713 384 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 KRT6CP48668 564 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 HTR6P50406 440 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 PRKAA2P54646 552 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 DLX5P56178 289 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 SLC29A2Q14542 456 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 RASA2Q15283 850 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 EIPR1Q53HC9 387 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 TBCELQ5QJ74 424 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 FNDC7Q5VTL7 733 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 SEM1Q6ZVN7 128 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 TRMT10CQ7L0Y3 403 aaKnown RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 ULK2Q8IYT8 1036 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 CLYBLQ8N0X4 340 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 OR52R1Q8NGF1 315 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 KIF18AQ8NI77 898 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 METTL6Q8TCB7 284 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 MTBPQ96DY7 904 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 CNRIP1Q96F85 164 aaPredicted RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 ZNF681Q96N22 645 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 TIMP4Q99727 224 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ZNF559Q9BR84 538 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 FAIM2Q9BWQ8 316 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ITPAQ9BY32 194 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 METTL7AQ9H8H3 244 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ANKRA2Q9H9E1 313 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 PFDN4Q9NQP4 134 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 QPCTLQ9NXS2 382 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 EHD3Q9NZN3 535 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 HEY2Q9UBP5 337 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 TBK1Q9UHD2 729 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ZNF639Q9UID6 485 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 UTS2RQ9UKP6 389 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 DLGAP4Q9Y2H0 992 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 PLLPQ9Y342 182 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 SLC6A5Q9Y345 797 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 TIMM22Q9Y584 194 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 ZNF780BQ9Y6R6 833 aa9.36□□□□□ -0.91
LDLR-214ENST00000560628 PHF3Q92576 2039 aaKnown RBP9.36□□□□□ -0.91
LDLR-214ENST00000560628 NCKAP5O14513 1909 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 A0A1W2PPM1 405 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 ULK1O75385 1050 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 PPM1BO75688 479 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 CBX7O95931 251 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 ATP1B1P05026 303 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 IL3P08700 152 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 TMED10P49755 219 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 CDK9P50750 372 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 TRA2BP62995 288 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 RPP38P78345 283 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 RAE1P78406 368 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 MRPS35P82673 323 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 HMGCS1Q01581 520 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 MYBPHQ13203 477 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 WIPI1Q5MNZ9 446 aaPredicted RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 RIPPLY2Q5TAB7 128 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 ANGPTL8Q6UXH0 198 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 NUP54Q7Z3B4 507 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 YRDCQ86U90 279 aaKnown RBP9.35□□□□□ -0.91
LDLR-214ENST00000560628 CDH24Q86UP0 819 aa9.35□□□□□ -0.91
LDLR-214ENST00000560628 CCNYL1Q8N7R7 359 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms