RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 TREX2Q9BQ50 279 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 ARHGAP9Q9BRR9 750 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 MKRN2Q9H000 416 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 B3GAT2Q9NPZ5 323 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 MCUBQ9NWR8 336 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 P2RX2Q9UBL9 471 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 ADAM30Q9UKF2 790 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 SLC9A8Q9Y2E8 581 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 GPSM3Q9Y4H4 160 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 DENND4CQ5VZ89 1909 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 C12orf71A8MTZ7 269 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 M0R3H8 397 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 LEFTY2O00292 366 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 PI15O43692 258 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 LEFTY1O75610 366 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 ARSBP15848 533 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 PKLRP30613 574 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 UBE3AQ05086 875 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 ASTLQ6HA08 431 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 GAREM2Q75VX8 874 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 LRRC56Q8IYG6 542 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 ELMOD2Q8IZ81 293 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 OR5H6Q8NGV6 325 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 TEX47Q8TBZ9 253 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 SETD7Q8WTS6 366 aaKnown RBP11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 SLC9A6Q92581 669 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 ZNF689Q96CS4 500 aaPredicted RBP11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 QRFPRQ96P65 431 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 TAS2R7Q9NYW3 318 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 CLCA2Q9UQC9 943 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 HSPB11Q9Y547 144 aa11.17□□□□□ -0.62
VIPAS39-211ENST00000557658 CKAP5Q14008 2032 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SGK494L7N484 410 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 AKR7A2O43488 359 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ICMTO60725 284 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 B4GALT2O60909 372 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SOD1P00441 154 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 LIMS3P0CW19 117 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 LIMS4P0CW20 117 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 PPP2R1BP30154 601 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SNRPD2P62316 118 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ABATP80404 500 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 NFE2L1Q14494 772 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SYPL1Q16563 259 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ARSIQ5FYB1 569 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 PRAMEF14Q5SWL7 426 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 PRAMEF13Q5VWM6 474 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ADGRF3Q8IZF5 1079 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ZFP41Q8N8Y5 198 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ZNF557Q8N988 423 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 AKAP1Q92667 903 aaKnown RBP eCLIP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 TM4SF18Q96CE8 201 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SLC38A2Q96QD8 506 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 KCNJ15Q99712 375 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 EPHX3Q9H6B9 360 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 PAK6Q9NQU5 681 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SIRT3Q9NTG7 399 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 TEKT2Q9UIF3 430 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ASB4Q9Y574 426 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 WASHC1A8K0Z3 465 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 INMT-MINDY4F8WBC2 141 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 PLPP1O14494 284 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 NOS1APO75052 506 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 HLA-DPB1P04440 258 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 GAAP10253 952 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 NR2F1P10589 423 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 CFL1P23528 166 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 CCT3P49368 545 aaKnown RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ZNF658BQ4V348 819 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ZNF57Q68EA5 555 aaPredicted RBP11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 SLC27A4Q6P1M0 643 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 DPPA4Q7L190 304 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ABI3BPQ7Z7G0 1075 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 MARCH9Q86YJ5 346 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 TMC8Q8IU68 726 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 CCDC28AQ8IWP9 274 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 MORN4Q8NDC4 146 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 ANKK1Q8NFD2 765 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 CHFRQ96EP1 664 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 NECTIN4Q96NY8 510 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 GPA33Q99795 319 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 MAN2C1Q9NTJ4 1040 aa11.16□□□□□ -0.62
VIPAS39-211ENST00000557658 NUP210Q8TEM1 1887 aaPredicted RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 LOC102723532A0A0G2JNH3 316 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 ISM1B1AKI9 464 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 RTCAO00442 366 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 SLC19A2O60779 497 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 ELFN1P0C7U0 828 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 OR12D1P0DN82 309 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 AVPR1BP47901 424 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 PCBP4P57723 403 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 SPOUT1Q5T280 376 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 KHDRBS2Q5VWX1 349 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 TRMT11Q7Z4G4 463 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 KIF18BQ86Y91 864 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 SLC37A3Q8NCC5 494 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 NEIL3Q8TAT5 605 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 XAGE5Q8WWM1 108 aa11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 EXOSC8Q96B26 276 aaKnown RBP11.15□□□□□ -0.62
VIPAS39-211ENST00000557658 OTULINQ96BN8 352 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms