RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CD1DP15813 335 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 EPORP19235 508 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 CD53P19397 219 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 CNR1P21554 472 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 CERS1P27544 350 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 SERPINB1P30740 379 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 DNASE1L1P49184 302 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 AGFG1P52594 562 aaKnown RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 ARFIP1P53367 373 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 PPP2R2BQ00005 443 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 TBL3Q12788 808 aaKnown RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 BIKQ13323 160 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 BMPR2Q13873 1038 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 DOC2AQ14183 400 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 FASTKD3Q14CZ7 662 aaKnown RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 ZKSCAN8Q15776 578 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 PDK4Q16654 411 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 C18orf21Q32NC0 220 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 PAGE2BQ5JRK9 111 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 ADNP2Q6IQ32 1131 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 TRILQ7L0X0 811 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 GPSM1Q86YR5 675 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 LAS2Q8IYD9 372 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 TMEM251Q8N6I4 163 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 FBXO36Q8NEA4 188 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 C1orf162Q8NEQ5 155 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 NUBPLQ8TB37 319 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 FBLIM1Q8WUP2 373 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 DIO2Q92813 273 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 TSPAN17Q96FV3 270 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 SCYL1Q96KG9 808 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 GPR22Q99680 433 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 SH3GL2Q99962 352 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 ARPC5LQ9BPX5 153 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 MS4A8Q9BY19 250 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 ALOXE3Q9BYJ1 711 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 PLEKHF2Q9H8W4 249 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 COPS7BQ9H9Q2 264 aaPredicted RBP9.2□□□□□ -0.94
SCFD1-220ENST00000556486 TSC22D4Q9Y3Q8 395 aa9.2□□□□□ -0.94
SCFD1-220ENST00000556486 FAM47E-STBD1D6RA91 191 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 CCDC188H7C350 402 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 WWP2O00308 870 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 CLGNO14967 610 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 HCN1O60741 890 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 C1QAP02745 245 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 IFNA16P05015 189 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 HIST1H1TP22492 207 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ATP5A1P25705 553 aaKnown RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 MAN2A2P49641 1150 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SLC12A2P55011 1212 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 STX4Q12846 297 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 PDIA2Q13087 525 aaKnown RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 OR4D1Q15615 310 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ZNF791Q3KP31 576 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ZNF793Q6ZN11 406 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SEM1Q6ZVN7 128 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 LRRC70Q7Z2Q7 622 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 P3H2Q8IVL5 708 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 DND1Q8IYX4 353 aaKnown RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SLC15A4Q8N697 577 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ACOT4Q8N9L9 421 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 TNIP2Q8NFZ5 429 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SLC2A12Q8TD20 617 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 PAQR8Q8TEZ7 354 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ZNF721Q8TF20 911 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ZNF473Q8WTR7 871 aaKnown RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 FAM222BQ8WU58 562 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 CCT6BQ92526 530 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 UBE2E3Q969T4 207 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ANKRD9Q96BM1 317 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 F2RL3Q96RI0 385 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 CPNE1Q99829 537 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 OR8D2Q9GZM6 311 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 LDAHQ9H6V9 325 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SEMA4BQ9NPR2 832 aaPredicted RBP9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SMYD2Q9NRG4 433 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SACM1LQ9NTJ5 587 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 C14orf119Q9NWQ9 140 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 MS4A12Q9NXJ0 267 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 QPCTLQ9NXS2 382 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 WWOXQ9NZC7 414 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 SPRR3Q9UBC9 169 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 COPS7AQ9UBW8 275 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 ATG4BQ9Y4P1 393 aa9.19□□□□□ -0.94
SCFD1-220ENST00000556486 TUBAL3A6NHL2 446 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 NCF1BA6NI72 391 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 FAM159BA6NKW6 160 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 RNF212BA8MTL3 300 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 NCF1CA8MVU1 366 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 C17orf105B2RV13 164 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 SYT5O00445 386 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 EIF3HO15372 352 aaKnown RBP eCLIP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ETHE1O95571 254 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 C8BP07358 591 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 CCDC166P0CW27 439 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 CCL3P10147 92 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 NCF1P14598 390 aaPredicted RBP9.18□□□□□ -0.94
SCFD1-220ENST00000556486 GABRA1P14867 456 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 STMN1P16949 149 aa9.18□□□□□ -0.94
SCFD1-220ENST00000556486 ENDOUP21128 410 aaKnown RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms