RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 BTBD16Q32M84 506 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 ENTPD8Q5MY95 495 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 PRAMEF14Q5SWL7 426 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 PRAMEF13Q5VWM6 474 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 GPA33Q99795 319 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 MARVELD1Q9BSK0 173 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 TMEM43Q9BTV4 400 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 GTPBP2Q9BX10 602 aaKnown RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 RNF186Q9NXI6 227 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 RTCAO00442 366 aaKnown RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 SLC43A1O75387 559 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 FAM157BP0CG42 384 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 PCBP4P57723 403 aaKnown RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 CAP1Q01518 475 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 UBE3AQ05086 875 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 SF3A2Q15428 464 aaKnown RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 MINDY4Q4G0A6 757 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF767PQ75MW2 155 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 TRAPPC5Q8IUR0 188 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 ZFP41Q8N8Y5 198 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 TEX47Q8TBZ9 253 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 XAGE5Q8WWM1 108 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 EXOSC8Q96B26 276 aaKnown RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 UPRTQ96BW1 309 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 ATF6BQ99941 703 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 RRAGCQ9HB90 399 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 B3GAT2Q9NPZ5 323 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 MAN2C1Q9NTJ4 1040 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 C5AR2Q9P296 337 aa16.57■□□□□ 0.24
SYNE3-202ENST00000553340 KIF26AQ9ULI4 1882 aaPredicted RBP16.57■□□□□ 0.24
SYNE3-202ENST00000553340 PLXND1Q9Y4D7 1925 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 A0A0X1KG70 313 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 TSPAN11A1L157 253 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 CRYZL1O95825 349 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 SOD1P00441 154 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 LIMS3P0CW19 117 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 LIMS4P0CW20 117 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 OR12D1P0DN82 309 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 NR2F1P10589 423 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 PPP2R1BP30154 601 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 RRAS2P62070 204 aaPredicted RBP16.56■□□□□ 0.24
SYNE3-202ENST00000553340 KHDRBS2Q5VWX1 349 aaKnown RBP16.56■□□□□ 0.24
SYNE3-202ENST00000553340 SLC27A4Q6P1M0 643 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 MZT2AQ6P582 158 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 LIPIQ6XZB0 460 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 CREB3L2Q70SY1 520 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 ABI3BPQ7Z7G0 1075 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 COMTD1Q86VU5 262 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 MORN4Q8NDC4 146 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 TTC9Q92623 222 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF717Q9BY31 904 aaPredicted RBP16.56■□□□□ 0.24
SYNE3-202ENST00000553340 STMN3Q9NZ72 180 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 CLCA2Q9UQC9 943 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 GPR52Q9Y2T5 361 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 A0A1W2PRU2 124 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 LSM11P83369 360 aaKnown RBP eCLIP16.56■□□□□ 0.24
SYNE3-202ENST00000553340 MAB21L1Q13394 359 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 POM121L1PQ3SYA9 428 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 CEP78Q5JTW2 689 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 SZRD1Q7Z422 152 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 FAM129CQ86XR2 697 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 ANKK1Q8NFD2 765 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 QRFPRQ96P65 431 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 SLC38A2Q96QD8 506 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 COQ7Q99807 217 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 PLA2G12AQ9BZM1 189 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 SAP130Q9H0E3 1048 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 SERHL2Q9H4I8 314 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 EGLN3Q9H6Z9 239 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 MCUBQ9NWR8 336 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 TAS2R7Q9NYW3 318 aa16.56■□□□□ 0.24
SYNE3-202ENST00000553340 ARSBP15848 533 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 RAB25P57735 213 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ABATP80404 500 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 RIN1Q13671 783 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 NFE2L1Q14494 772 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SHFQ7M4L6 423 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ADIPOR2Q86V24 386 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF557Q8N988 423 aaPredicted RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SUN5Q8TC36 379 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 PRRC1Q96M27 445 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 F2RL3Q96RI0 385 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 KCNJ15Q99712 375 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 OR51I1Q9H343 314 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 DIABLOQ9NR28 239 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 TRPC4Q9UBN4 977 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ADAM30Q9UKF2 790 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 GPSM3Q9Y4H4 160 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 PRAMEF27A3QJZ7 478 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SGK494L7N484 410 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 AKR7A2O43488 359 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 HLA-DPB1P04440 258 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 FRKP42685 505 aaPredicted RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 OR3A3P47888 321 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 SNRPD2P62316 118 aaKnown RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 MRPL28Q13084 256 aaKnown RBP16.55■□□□□ 0.24
SYNE3-202ENST00000553340 UAP1L1Q3KQV9 507 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 ZNF805Q5CZA5 627 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 LCTLQ6UWM7 567 aa16.55■□□□□ 0.24
SYNE3-202ENST00000553340 RFPL4BQ6ZWI9 263 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms