RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 SLC25A23Q9BV35 468 aa11.32□□□□□ -0.6
DDX55-210ENST00000543016 RNF32Q9H0A6 362 aa11.32□□□□□ -0.6
DDX55-210ENST00000543016 DDX18Q9NVP1 670 aaKnown RBP11.32□□□□□ -0.6
DDX55-210ENST00000543016 CCDC167Q9P0B6 97 aa11.32□□□□□ -0.6
DDX55-210ENST00000543016 A0A1W2PP18 115 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ERVH48-1M5A8F1 160 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 FCHO1O14526 889 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ACOX3O15254 700 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 DCTN3O75935 186 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 C6orf47O95873 294 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 CBX7O95931 251 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 CT62P0C5K7 136 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ZCCHC18P0CG32 403 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ITGAMP11215 1152 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 SSTR4P31391 388 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 SOX11P35716 441 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 MC3RP41968 323 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 CCT3P49368 545 aaKnown RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 POLE2P56282 527 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 MLF1P58340 268 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 HBA1P69905 142 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 PHC1P78364 1004 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 LTB4RQ15722 352 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 VPS26BQ4G0F5 336 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 TRMT12Q53H54 448 aaKnown RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 COQ5Q5HYK3 327 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ABHD17BQ5VST6 288 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 TCTN3Q6NUS6 607 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 TMEM107Q6UX40 140 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 FUNDC1Q8IVP5 155 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 GPALPP1Q8IXQ4 340 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 DND1Q8IYX4 353 aaKnown RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 TAGAPQ8N103 731 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 OR7G2Q8NG99 324 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 OR52R1Q8NGF1 315 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 OR9I1Q8NGQ6 314 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 KAT2AQ92830 837 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 EXTL1Q92935 676 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 PANX1Q96RD7 426 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 SMAD5Q99717 465 aaKnown RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 EPS8L2Q9H6S3 715 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ZNF552Q9H707 407 aaPredicted RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 MYOTQ9UBF9 498 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 BCAP29Q9UHQ4 241 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 ZNF223Q9UK11 482 aaPredicted RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 VPS4AQ9UN37 437 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 YARS2Q9Y2Z4 477 aaKnown RBP11.31□□□□□ -0.6
DDX55-210ENST00000543016 ZNF451Q9Y4E5 1061 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 CAPN7Q9Y6W3 813 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 MED13Q9UHV7 2174 aa11.31□□□□□ -0.6
DDX55-210ENST00000543016 C2orf92A0A1B0GVN3 265 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 BBIP1A8MTZ0 92 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 A8MUI8 341 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 CAPN14A8MX76 684 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 HRKO00198 91 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 UPK1AO00322 258 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 RFXANKO14593 260 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 ERN1O75460 977 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 DNAJB5O75953 348 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 PSMG1O95456 288 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 CLPSP04118 112 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 SNRPB2P08579 225 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 NAGAP17050 411 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 DRD5P21918 477 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 UQCRC2P22695 453 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 SOX18P35713 384 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 PPICP45877 212 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 ZFP36L2P47974 494 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 PRIM2P49643 509 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 EMDP50402 254 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 DGKQP52824 942 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 MRPS35P82673 323 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 KLF10Q13118 480 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 STX5Q13190 355 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 MFAP5Q13361 173 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 EBPQ15125 230 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 ZNHIT3Q15649 155 aaPredicted RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 SPDYE7PQ495Y7 208 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 ACER2Q5QJU3 275 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 C19orf48Q6RUI8 117 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 IGFL2Q6UWQ7 119 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 IGFL3Q6UXB1 125 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 KIF2BQ8N4N8 673 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 CDRT4Q8N9R6 151 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 CCDC197Q8NCU1 140 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 LSM14AQ8ND56 463 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 NUP43Q8NFH3 380 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 FDCSPQ8NFU4 85 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 OR4A15Q8NGL6 344 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 C16orf52Q8NHV5 167 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 SLC22A8Q8TCC7 542 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 TTC9Q92623 222 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 FAM120BQ96EK7 910 aaKnown RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 HSPBAP1Q96EW2 488 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 MS4A4EQ96PG1 132 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 NMUR2Q9GZQ4 415 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 WWTR1Q9GZV5 400 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 SIRT3Q9NTG7 399 aaPredicted RBP11.3□□□□□ -0.6
DDX55-210ENST00000543016 GIN1Q9NXP7 522 aa11.3□□□□□ -0.6
DDX55-210ENST00000543016 STMN3Q9NZ72 180 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms