RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GTF3C1Q12789 2109 aa13.07□□□□□ -0.32
USP28-209ENST00000540925 CENPEQ02224 2701 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 NCOA6Q14686 2063 aaPredicted RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 MYO7BQ6PIF6 2116 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TRGV8A0A0C4DH27 118 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 ANKRD33BA6NCL7 494 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 LRRC3CA6NJW4 275 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TMEM233B4DJY2 109 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 G3V3Y1 287 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 SLC28A1O00337 649 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 ADAM10O14672 748 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TFECO14948 347 aaPredicted RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 ZNHIT1O43257 154 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 ZG16O60844 167 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 IGHG3P01860 377 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 DHRS4L1P0CG22 281 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TACR1P25103 407 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 SERPINB5P36952 375 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 PIGAP37287 484 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 DNASE1L1P49184 302 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 MRPS35P82673 323 aaKnown RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 IMPG1Q17R60 797 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 KRT71Q3SY84 523 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 SPDYAQ5MJ70 313 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 SLC22A10Q63ZE4 541 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 RGS9BPQ6ZS82 235 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 GK5Q6ZS86 529 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 ZCCHC23Q6ZST2 131 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 IKBIPQ70UQ0 350 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 MAMDC2Q7Z304 686 aaPredicted RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 EXOC3L1Q86VI1 746 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 CCDC116Q8IYX3 515 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TAGAPQ8N103 731 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 EXOSC8Q96B26 276 aaKnown RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 ZNF764Q96H86 408 aaPredicted RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 CCDC120Q96HB5 630 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 SECISBP2Q96T21 854 aaKnown RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 BRINP2Q9C0B6 783 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 NXF5Q9H1B4 397 aaKnown RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 IL1RL2Q9HB29 575 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 C1orf109Q9NX04 203 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TUBA8Q9NY65 449 aaPredicted RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 CNIH4Q9P003 139 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 TINAGQ9UJW2 476 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 POLR3HQ9Y535 204 aaPredicted RBP13.06□□□□□ -0.32
USP28-209ENST00000540925 NPFFR2Q9Y5X5 522 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 ITPR2Q14571 2701 aa13.06□□□□□ -0.32
USP28-209ENST00000540925 LSM1O15116 133 aaKnown RBP13.05□□□□□ -0.32
USP28-209ENST00000540925 TO15178 435 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 PLOD3O60568 738 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 TRIM3O75382 744 aaPredicted RBP13.05□□□□□ -0.32
USP28-209ENST00000540925 CRCPO75575 148 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 P04436 131 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 NEFHP12036 1026 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 ABCD3P28288 659 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 PPIAP62937 165 aaKnown RBP13.05□□□□□ -0.32
USP28-209ENST00000540925 RPS6KA2Q15349 733 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 XKR7Q5GH72 579 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 TMEM64Q6YI46 380 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 FAM47EQ6ZV65 393 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 DOLPP1Q86YN1 238 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 HOMEZQ8IX15 550 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 CLYBLQ8N0X4 340 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 TMEM251Q8N6I4 163 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 OR52R1Q8NGF1 315 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 OR9A2Q8NGT5 310 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 ITLN2Q8WWU7 325 aaPredicted RBP13.05□□□□□ -0.32
USP28-209ENST00000540925 MAGED4Q96JG8 741 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 EGLN2Q96KS0 407 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 ZIM3Q96PE6 472 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 BTBD9Q96Q07 612 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 ITPAQ9BY32 194 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 LRTM1Q9HBL6 345 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 CFL2Q9Y281 166 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 TRAF6Q9Y4K3 522 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 HRH3Q9Y5N1 445 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 ZNF407Q9C0G0 2248 aa13.05□□□□□ -0.32
USP28-209ENST00000540925 A0A1B0GTH9 108 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 A0A1B0GVC2 190 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 A1L4Q6 167 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 CCL21O00585 134 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 ACOX3O15254 700 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 RGS16O15492 202 aaPredicted RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 TBX19O60806 448 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 PSMG1O95456 288 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 CT45A8P0DMV1 189 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 CT45A9P0DMV2 189 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 NAGAP17050 411 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 DRD5P21918 477 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 MAGEA5P43359 124 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 PPICP45877 212 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 SERPINB4P48594 390 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 FBXW4P57775 412 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 ADORA2A-AS1P86434 159 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 C2orf80Q0P641 193 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 MPP2Q14168 576 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 RFTN2Q52LD8 501 aaPredicted RBP13.04□□□□□ -0.32
USP28-209ENST00000540925 CT45A2Q5DJT8 189 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 EMC4Q5J8M3 183 aa13.04□□□□□ -0.32
USP28-209ENST00000540925 C6orf163Q5TEZ5 329 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms