RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	CBX7	O95931	251 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	JUN	P05412	331 aa	Known RBP	13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	BCKDHA	P12694	445 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	EDN3	P14138	238 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PCSK2	P16519	638 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	GPX3	P22352	226 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	NTS	P30990	170 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	MPI	P34949	423 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PTGER1	P34995	402 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	ASMT	P46597	345 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	TDGF1P3	P51864	188 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PMP22	Q01453	160 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	DUSP8	Q13202	625 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PDE7A	Q13946	482 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PRSS53	Q2L4Q9	553 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	C6orf136	Q5SQH8	315 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	LYPD8	Q6UX82	237 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	IL20RB	Q6UXL0	311 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	RTL4	Q6ZR62	310 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	MDGA2	Q7Z553	956 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	TRIM42	Q8IWZ5	723 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	CCDC116	Q8IYX3	515 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	FAM9C	Q8IZT9	166 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	GOLM1	Q8NBJ4	401 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PSD4	Q8NDX1	1056 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	OR9A2	Q8NGT5	310 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	C16orf52	Q8NHV5	167 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	TP53INP1	Q96A56	240 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	SPACA9	Q96E40	222 aa	Predicted RBP	13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	SGCZ	Q96LD1	299 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	FRMD6	Q96NE9	622 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	TSSK3	Q96PN8	268 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	BBS4	Q96RK4	519 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	NSRP1	Q9H0G5	558 aa	Known RBP	13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	REEP4	Q9H6H4	257 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	THAP1	Q9NVV9	213 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	GIMAP2	Q9UG22	337 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	CROCC	Q5TZA2	2017 aa		13.9	□□□□□ -0.18
CPSF1-208	ENST00000532560	PLOD3	O60568	738 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	SNN	O75324	88 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	FBXO45	P0C2W1	286 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	GNLY	P22749	145 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	MRPS35	P82673	323 aa	Known RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	EXOSC7	Q15024	291 aa	Known RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	PDCD2	Q16342	344 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	SMU1	Q2TAY7	513 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	ZNF791	Q3KP31	576 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	TRMT12	Q53H54	448 aa	Known RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	GKAP1	Q5VSY0	366 aa	Predicted RBP	13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	HLA-DQA1	Q5Y7H0	255 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	ATG16L1	Q676U5	607 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	C10orf67	Q8IYJ2	551 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	TAGAP	Q8N103	731 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	FNDC5	Q8NAU1	212 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	POGLUT1	Q8NBL1	392 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	OR52R1	Q8NGF1	315 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	CLHC1	Q8NHS4	586 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	ADIPOR1	Q96A54	375 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	TUBGCP3	Q96CW5	907 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	MTERF3	Q96E29	417 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	CHMP6	Q96FZ7	201 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	PRODH2	Q9UF12	536 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	BCAP29	Q9UHQ4	241 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	DTX4	Q9Y2E6	619 aa		13.89	□□□□□ -0.19
CPSF1-208	ENST00000532560	PRRC2C	Q9Y520	2896 aa	Known RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560		A0A087WV62	115 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	ANKUB1	A6NFN9	424 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	KLRC4-KLRK1	H3BQV0	150 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	PDPK1	O15530	556 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	BCAS2	O75934	225 aa	Predicted RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	IFI6	P09912	130 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	PRPS2	P11908	318 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	EMD	P50402	254 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	NCBP2	P52298	156 aa	Known RBP eCLIP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	MAD2L1	Q13257	205 aa	Predicted RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	MRPL49	Q13405	166 aa	Known RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	FHL5	Q5TD97	284 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	SULF2	Q8IWU5	870 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	LRRC34	Q8IZ02	419 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	LIX1	Q8N485	282 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	CPSF7	Q8N684	471 aa	Known RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	KAT2A	Q92830	837 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	GFM2	Q969S9	779 aa	Known RBP	13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	PPCDC	Q96CD2	204 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	AMDHD1	Q96NU7	426 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	C1orf50	Q9BV19	199 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	ITPA	Q9BY32	194 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	GLIPR2	Q9H4G4	154 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	SH2D2A	Q9NP31	389 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	ASIC5	Q9NY37	505 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	BAIAP2L1	Q9UHR4	511 aa		13.88	□□□□□ -0.19
CPSF1-208	ENST00000532560	MYO18B	Q8IUG5	2567 aa		13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	TENM4	Q6N022	2769 aa		13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	PLOD2	O00469	737 aa		13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	KLF11	O14901	512 aa		13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	SCAMP2	O15127	329 aa	Known RBP	13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	AKAP10	O43572	662 aa		13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	PEX1	O43933	1283 aa		13.87	□□□□□ -0.19
CPSF1-208	ENST00000532560	LRAT	O95237	230 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms