RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 STMN3Q9NZ72 180 aa13.42□□□□□ -0.26
CPSF1-206ENST00000531480 SH3BP4Q9P0V3 963 aa13.42□□□□□ -0.26
CPSF1-206ENST00000531480 ARL2BPQ9Y2Y0 163 aa13.42□□□□□ -0.26
CPSF1-206ENST00000531480 NUP214P35658 2090 aaPredicted RBP13.42□□□□□ -0.26
CPSF1-206ENST00000531480 EXPH5Q8NEV8 1989 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 UBDO15205 165 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 DPM1O60762 260 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 DRD4P21917 467 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 IL12AP29459 219 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 CD97P48960 835 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 PHC1P78364 1004 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 MRPS35P82673 323 aaKnown RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 SRSF11Q05519 484 aaKnown RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 ABHD17BQ5VST6 288 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 Q6ZS92 163 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 BEST3Q8N1M1 668 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 GLB1L3Q8NCI6 653 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 SIMC1Q8NDZ2 872 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 OR7G2Q8NG99 324 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 C16orf52Q8NHV5 167 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 RFWD2Q8NHY2 731 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 ZFP28Q8NHY6 868 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 HOXB13Q92826 284 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 TP53INP1Q96A56 240 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 ELP4Q96EB1 424 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 ELAC2Q9BQ52 826 aaKnown RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 DUSP26Q9BV47 211 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 TRIM4Q9C037 500 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 WWTR1Q9GZV5 400 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 CDCP1Q9H5V8 836 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 EPS8L2Q9H6S3 715 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 ZNF71Q9NQZ8 489 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 TMEM45AQ9NWC5 275 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 ZIM2Q9NZV7 527 aa13.41□□□□□ -0.26
CPSF1-206ENST00000531480 C19orf53Q9UNZ5 99 aaPredicted RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 YARS2Q9Y2Z4 477 aaKnown RBP13.41□□□□□ -0.26
CPSF1-206ENST00000531480 A8MUI8 341 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 E9PBE3 544 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 UPK1AO00322 258 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 RNASET2O00584 256 aaKnown RBP13.4□□□□□ -0.26
CPSF1-206ENST00000531480 PRAMEF2O60811 474 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 DCTN3O75935 186 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 NADKO95544 446 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-206ENST00000531480 WDPCPO95876 746 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 GPX3P22352 226 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 PTGER1P34995 402 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 ATP4BP51164 291 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 UFM1P61960 85 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 PIGGQ5H8A4 983 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 C6orf163Q5TEZ5 329 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 FCRLBQ6BAA4 426 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 NXNQ6DKJ4 435 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 LYPD8Q6UX82 237 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 ZNF551Q7Z340 670 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-206ENST00000531480 PIGWQ7Z7B1 504 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 SLC15A4Q8N697 577 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 DOK4Q8TEW6 326 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 KAT2AQ92830 837 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 ZNF385DQ9H6B1 395 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 NPHS2Q9NP85 383 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 SIRT3Q9NTG7 399 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-206ENST00000531480 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-206ENST00000531480 TRIM33Q9UPN9 1127 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 ERVK-11Q9UQG0 969 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 CFL2Q9Y281 166 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 DTX4Q9Y2E6 619 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 PCDHGB6Q9Y5F9 930 aa13.4□□□□□ -0.26
CPSF1-206ENST00000531480 OR5H15A6NDH6 313 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 PYCARD-AS1I3L0S3 204 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 FCHO1O14526 889 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 SNX3O60493 162 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 ZNF354AO60765 605 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-206ENST00000531480 CCDC22O60826 627 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 ITGA10O75578 1167 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 MAP3K8P41279 467 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 MC3RP41968 323 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 KIR3DL1P43629 444 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 TNFSF10P50591 281 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 ARFIP2P53365 341 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 MANFP55145 182 aaKnown RBP13.39□□□□□ -0.27
CPSF1-206ENST00000531480 TUBA3CQ13748 450 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 EXOSC7Q15024 291 aaKnown RBP13.39□□□□□ -0.27
CPSF1-206ENST00000531480 EXOSC6Q5RKV6 272 aaKnown RBP13.39□□□□□ -0.27
CPSF1-206ENST00000531480 METTL21CQ5VZV1 264 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 TUBA3EQ6PEY2 450 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 TMEM64Q6YI46 380 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 LINC00696Q6ZRV3 163 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 SLC29A4Q7RTT9 530 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 ZNF227Q86WZ6 799 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 ZADH2Q8N4Q0 377 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 MDS2Q8NDY4 140 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 OR52R1Q8NGF1 315 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 OR5P2Q8WZ92 322 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 VSTM2LQ96N03 204 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 BTBD9Q96Q07 612 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 RASL10BQ96S79 203 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 NEUROD4Q9HD90 331 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 ABI3Q9P2A4 366 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 PRODH2Q9UF12 536 aa13.39□□□□□ -0.27
CPSF1-206ENST00000531480 DCTN4Q9UJW0 460 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms