RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 UBASH3AP57075 661 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 HERVK_113P63132 956 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 ERVK-8P63133 956 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 IGLV3-21P80748 117 aaPredicted RBP7.4□□□□□ -1.22
CD44-232ENST00000531118 PLIN5Q00G26 463 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 FUT7Q11130 342 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 GPS1Q13098 491 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 FAM120AOSQ5T036 256 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TIGD3Q6B0B8 471 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 CYB5R2Q6BCY4 276 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TRIM40Q6P9F5 258 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 SHISA2Q6UWI4 295 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TMEM64Q6YI46 380 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 RNF111Q6ZNA4 994 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 DGAT2L6Q6ZPD8 337 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 PRUNE1Q86TP1 453 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 IFNEQ86WN2 208 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TAGAPQ8N103 731 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 MYO1HQ8N1T3 1032 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 RFLNBQ8N5W9 214 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 OR10H5Q8NGA6 315 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 OR14L1PQ8NHC6 308 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 LILRB1Q8NHL6 650 aaPredicted RBP7.4□□□□□ -1.22
CD44-232ENST00000531118 RAB3IL1Q8TBN0 382 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 ATG4AQ8WYN0 398 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 FBXL8Q96CD0 374 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 SENP5Q96HI0 755 aaPredicted RBP7.4□□□□□ -1.22
CD44-232ENST00000531118 DGAT2Q96PD7 388 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 SERINC2Q96SA4 455 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TRAF4Q9BUZ4 470 aaPredicted RBP7.4□□□□□ -1.22
CD44-232ENST00000531118 ERVK-6Q9BXR3 956 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 ABHD10Q9NUJ1 306 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 ARL15Q9NXU5 204 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TRMT6Q9UJA5 497 aaKnown RBP7.4□□□□□ -1.22
CD44-232ENST00000531118 PROCRQ9UNN8 238 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 TFR2Q9UP52 801 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 ERVK-19Q9WJR5 959 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 RNF115Q9Y4L5 304 aa7.4□□□□□ -1.22
CD44-232ENST00000531118 CTAGE9A4FU28 777 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 PABPN1LA6NDY0 278 aaKnown RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 CLOCKO15516 846 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 EMC8O43402 210 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 DYRK3O43781 588 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 SSX4O60224 188 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 DLX3O60479 287 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 TBX6O95947 436 aaPredicted RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 FTCDO95954 541 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 CLPSP04118 112 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 PTMAP06454 111 aaKnown RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 SLC25A16P16260 332 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 TBXA2RP21731 343 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 CASP3P42574 277 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 SLC1A2P43004 574 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 STARP49675 285 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 RGS4P49798 205 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 NUDT6P53370 316 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 GFRA1P56159 465 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 AP1S2P56377 157 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 RPP38P78345 283 aaKnown RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 ZNF844Q08AG5 666 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 FGFBP1Q14512 234 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 SQLEQ14534 574 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 OASLQ15646 514 aaKnown RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 NRF1Q16656 503 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 ADPRMQ3LIE5 342 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 FAM166AQ6J272 317 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 UGT3A1Q6NUS8 523 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 NEPROQ6NW34 567 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 CLEC2AQ6UVW9 174 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 DENND6AQ8IWF6 608 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 TRIM42Q8IWZ5 723 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 PALM2Q8IXS6 379 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 KBTBD8Q8NFY9 601 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 TTLQ8NG68 377 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 OR2L5Q8NG80 312 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 OR1J4Q8NGS1 313 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 DOK4Q8TEW6 326 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 SMAP2Q8WU79 429 aaPredicted RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 EEF1AKMT1Q8WVE0 214 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 FIG4Q92562 907 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 NEUROG1Q92886 237 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 TP53INP1Q96A56 240 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 REPS1Q96D71 796 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 MAPKAP1Q9BPZ7 522 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 OSBPL11Q9BXB4 747 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 C12orf65Q9H3J6 166 aaKnown RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 MANSC1Q9H8J5 431 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 ACTR8Q9H981 624 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 LYRM4Q9HD34 91 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 SERHLQ9NQF3 203 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 BFARQ9NZS9 450 aa7.39□□□□□ -1.23
CD44-232ENST00000531118 PTBP2Q9UKA9 531 aaKnown RBP7.39□□□□□ -1.23
CD44-232ENST00000531118 TCRBV7S2A1N4TA0A589 114 aa7.38□□□□□ -1.23
CD44-232ENST00000531118 LRIT2A6NDA9 550 aa7.38□□□□□ -1.23
CD44-232ENST00000531118 OR6C76A6NM76 312 aa7.38□□□□□ -1.23
CD44-232ENST00000531118 CAPN14A8MX76 684 aa7.38□□□□□ -1.23
CD44-232ENST00000531118 CDC7O00311 574 aa7.38□□□□□ -1.23
CD44-232ENST00000531118 MFAP3LO75121 409 aa7.38□□□□□ -1.23
CD44-232ENST00000531118 HIST1H2AGP0C0S8 130 aaPredicted RBP7.38□□□□□ -1.23
CD44-232ENST00000531118 RHOXF2BP0C7M4 288 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms