RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 FHP07954 510 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 KRT16P08779 473 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 IFI6P09912 130 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 RAB40ALP0C0E4 278 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ZGLP1P0C6A0 271 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ZCCHC18P0CG32 403 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 SLC35E2P0CK97 266 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 NR2F6P10588 404 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 PORP16435 677 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 ZNF28P17035 718 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ITGAXP20702 1163 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 RBMS1P29558 406 aaKnown RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 XCR1P46094 333 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ALDH9A1P49189 494 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 XKP51811 444 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 DGKQP52824 942 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 MANFP55145 182 aaKnown RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 RNF4P78317 190 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 GABREP78334 506 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 OLR1P78380 273 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 IGLV3-21P80748 117 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 SERTAD2Q14140 314 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 COL28A1Q2UY09 1125 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 TBC1D25Q3MII6 688 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 MMEL1Q495T6 779 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 LACTB2Q53H82 288 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 C3orf38Q5JPI3 329 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 SPANXN4Q5MJ08 99 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 C1orf189Q5VU69 101 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 OR4F3Q6IEY1 312 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 OR52E8Q6IFG1 317 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 C6orf15Q6UXA7 325 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 HACD2Q6Y1H2 254 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ESX1Q8N693 406 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 OR7A2PQ8NGA2 310 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 PSMA8Q8TAA3 256 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 GTF2H4Q92759 462 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 UCN3Q969E3 161 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 NACC2Q96BF6 587 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ANKRD9Q96BM1 317 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 ROPN1LQ96C74 230 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ZBED6CLQ96FA7 236 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 RBM18Q96H35 190 aaKnown RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 PEX11GQ96HA9 241 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ITCHQ96J02 903 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 BBS4Q96RK4 519 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 PRTFDC1Q9NRG1 225 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 LANCL2Q9NS86 450 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 GIMAP4Q9NUV9 329 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 ARL8BQ9NVJ2 186 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 GID8Q9NWU2 228 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 TAS2R9Q9NYW1 312 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 IFT80Q9P2H3 777 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 PISDQ9UG56 409 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 LEF1Q9UJU2 399 aaPredicted RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 NXT1Q9UKK6 140 aaKnown RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 RALYQ9UKM9 306 aaKnown RBP6.93□□□□□ -1.3
CD44-228ENST00000528455 ACSL6Q9UKU0 697 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 MAN2B2Q9Y2E5 1009 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 GMEB1Q9Y692 573 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 MAU2Q9Y6X3 613 aa6.93□□□□□ -1.3
CD44-228ENST00000528455 FER1L5A0AVI2 2057 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ZNF860A6NHJ4 632 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 GLOD5A6NK44 160 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CDRT15L2A8MXV6 281 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 B2RBV5 119 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 AGRPO00253 132 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 PLOD2O00469 737 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 FBP2O00757 339 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 AIM2O14862 343 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 PDPK1O15530 556 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ERAL1O75616 437 aaKnown RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 SOX30O94993 753 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 UNC5CO95185 931 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 KCNH1O95259 989 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ATP1B1P05026 303 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CD1EP15812 388 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 SLC5A2P31639 672 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 MAT1AQ00266 395 aaKnown RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 STX4Q12846 297 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 MAP4K2Q12851 820 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 SLC13A2Q13183 592 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ART3Q13508 389 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ERV3-1Q14264 604 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ZSCAN26Q16670 478 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 SYT16Q17RD7 645 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 PRSS53Q2L4Q9 553 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 MPEG1Q2M385 716 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 VWA2Q5GFL6 755 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 PAGE3Q5JUK9 113 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 LRIF1Q5T3J3 769 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 ARHGAP40Q5TG30 622 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 MLIPQ5VWP3 458 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CPZQ66K79 652 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 DLEU7Q6UYE1 221 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 QSOX2Q6ZRP7 698 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 CCDC121Q6ZUS5 278 aa6.92□□□□□ -1.3
CD44-228ENST00000528455 TIPARPQ7Z3E1 657 aaKnown RBP6.92□□□□□ -1.3
CD44-228ENST00000528455 SNX32Q86XE0 403 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms