RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CSNK2A2P19784 350 aaPredicted RBP9.79□□□□□ -0.84
CD44-227ENST00000528086 NT5EP21589 574 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 CCT5P48643 541 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 ZNF844Q08AG5 666 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 NNATQ16517 81 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 TNFAIP8L3Q5GJ75 292 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 RTL6Q6ICC9 239 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 EMBQ6PCB8 327 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 NPSR1Q6W5P4 371 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 ZCCHC23Q6ZST2 131 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 TRILQ7L0X0 811 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 SRRM1Q8IYB3 904 aaKnown RBP9.79□□□□□ -0.84
CD44-227ENST00000528086 CCDC116Q8IYX3 515 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 VWA5B2Q8N398 1253 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 SLC15A4Q8N697 577 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 OR7G2Q8NG99 324 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 OR5M3Q8NGP4 307 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 OR9A2Q8NGT5 310 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 FAM57AQ8TBR7 257 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 ZNF675Q8TD23 568 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 TCP10LQ8TDR4 215 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 NUDT8Q8WV74 236 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 KAT2AQ92830 837 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 HGDQ93099 445 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 TP53INP1Q96A56 240 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 EXOSC8Q96B26 276 aaKnown RBP9.79□□□□□ -0.84
CD44-227ENST00000528086 KLHL29Q96CT2 875 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 CCDC126Q96EE4 140 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 ART5Q96L15 291 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 FAM111AQ96PZ2 611 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 FAM173AQ9BQD7 235 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 ITPAQ9BY32 194 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 ZNF395Q9H8N7 513 aaPredicted RBP9.79□□□□□ -0.84
CD44-227ENST00000528086 SACM1LQ9NTJ5 587 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 SPRR3Q9UBC9 169 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 GIMAP2Q9UG22 337 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 UTS2RQ9UKP6 389 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 POLR3HQ9Y535 204 aaPredicted RBP9.79□□□□□ -0.84
CD44-227ENST00000528086 DNAJC15Q9Y5T4 150 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 NPFFR2Q9Y5X5 522 aa9.79□□□□□ -0.84
CD44-227ENST00000528086 A0A1B0GVC2 190 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 MYO1GB0I1T2 1018 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ESPNB1AK53 854 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 KDM4EB2RXH2 506 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 TRIM13O60858 407 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ABCB1P08183 1280 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 ANXA4P09525 319 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 CT45A8P0DMV1 189 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 CT45A9P0DMV2 189 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 DRD2P14416 443 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 PRPH2P23942 346 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ABCD3P28288 659 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ALDH9A1P49189 494 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ACSM2AQ08AH3 577 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.78□□□□□ -0.84
CD44-227ENST00000528086 ZNF385BQ569K4 471 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 SPIN4Q56A73 249 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 CT45A2Q5DJT8 189 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ARL13AQ5H913 290 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 SLC22A10Q63ZE4 541 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ACSM2BQ68CK6 577 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 NOXRED1Q6NXP6 359 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 BNC2Q6ZN30 1099 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 RNF165Q6ZSG1 346 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 SLC29A4Q7RTT9 530 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 MRGPRGQ86SM5 289 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 CD163Q86VB7 1156 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 LRRC25Q8N386 305 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 FBXW8Q8N3Y1 598 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ACBD4Q8NC06 268 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 FAM98AQ8NCA5 519 aaKnown RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 C7orf57Q8NEG2 295 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 C17orf47Q8NEP4 570 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 OR7G1Q8NGA0 311 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 OR52R1Q8NGF1 315 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 SPPL2AQ8TCT8 520 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 C3orf30Q96M34 536 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 VSTM2LQ96N03 204 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 NODALQ96S42 347 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 BRINP2Q9C0B6 783 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 UBQLN3Q9H347 655 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 ZNF703Q9H7S9 590 aaPredicted RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 IL1RL2Q9HB29 575 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 SLC35C2Q9NQQ7 365 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 TAS2R7Q9NYW3 318 aa9.78□□□□□ -0.84
CD44-227ENST00000528086 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 INTS1Q8N201 2190 aaKnown RBP9.78□□□□□ -0.84
CD44-227ENST00000528086 ANKRD33BA6NCL7 494 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 CDC40O60508 579 aaKnown RBP eCLIP9.77□□□□□ -0.85
CD44-227ENST00000528086 UGT2B11O75310 529 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 RSL1D1O76021 490 aaKnown RBP9.77□□□□□ -0.85
CD44-227ENST00000528086 PSMG1O95456 288 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 FGF4P08620 206 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 UROSP10746 265 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 DDCP20711 480 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 PTGS2P35354 604 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 KIR3DL1P43629 444 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 CORO7P57737 925 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 ART3Q13508 389 aa9.77□□□□□ -0.85
CD44-227ENST00000528086 RFTN2Q52LD8 501 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms