RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 INSM1Q01101 510 aaPredicted RBP19.65■□□□□ 0.74
VPS28-208ENST00000527797 MINDY4Q4G0A6 757 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 NKAIN1Q4KMZ8 207 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 VWA2Q5GFL6 755 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 MFSD12Q6NUT3 480 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 LRRC74BQ6ZQY2 392 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 CBLL1Q75N03 491 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 COX15Q7KZN9 410 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 LGI4Q8N135 537 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 VWA5B2Q8N398 1253 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 PYURFQ96I23 114 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 OR7D2Q96RA2 312 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 PKP2Q99959 881 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 ADPRHL2Q9NX46 363 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 DUXAA6NLW8 204 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 ASNA1O43681 348 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 GCM2O75603 506 aaPredicted RBP19.65■□□□□ 0.74
VPS28-208ENST00000527797 TIPRLO75663 272 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 IFNA14P01570 189 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 HOXB6P17509 224 aaKnown RBP19.65■□□□□ 0.74
VPS28-208ENST00000527797 EIF3MQ7L2H7 374 aaKnown RBP19.65■□□□□ 0.74
VPS28-208ENST00000527797 GALNT10Q86SR1 603 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 PATL1Q86TB9 770 aaKnown RBP19.65■□□□□ 0.74
VPS28-208ENST00000527797 SLC44A2Q8IWA5 706 aaPredicted RBP19.65■□□□□ 0.74
VPS28-208ENST00000527797 LILRA2Q8N149 483 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 FAM86B1Q8N7N1 296 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 FAM110BQ8TC76 370 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 ADAMTS15Q8TE58 950 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 LRTOMTQ8WZ04 291 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 SLC47A1Q96FL8 570 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 TMEM19Q96HH6 336 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 CHID1Q9BWS9 393 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 YY1AP1Q9H869 796 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 ADAP2Q9NPF8 381 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 SLC22A11Q9NSA0 550 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 ZNF451Q9Y4E5 1061 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 SPTBP11277 2137 aa19.65■□□□□ 0.74
VPS28-208ENST00000527797 CACNA1HO95180 2353 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 B4E171 279 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 SLC28A2O43868 658 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 CPNE3O75131 537 aaKnown RBP19.64■□□□□ 0.73
VPS28-208ENST00000527797 ONECUT2O95948 504 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 NR2F1P10589 423 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 FCGR1AP12314 374 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 TNNI3P19429 210 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 TSPAN7P41732 249 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 MAN2A2P49641 1150 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 CLCN2P51788 898 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 OCA2Q04671 838 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 ELOAQ14241 798 aaKnown RBP19.64■□□□□ 0.73
VPS28-208ENST00000527797 GNA13Q14344 377 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 CRB2Q5IJ48 1285 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 STPG1Q5TH74 334 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 CDC73Q6P1J9 531 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 ERMP1Q7Z2K6 904 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 PIP4P1Q86T03 277 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 SIMC1Q8NDZ2 872 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 NRG4Q8WWG1 115 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 OTUB1Q96FW1 271 aaPredicted RBP19.64■□□□□ 0.73
VPS28-208ENST00000527797 TGIF2Q9GZN2 237 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 MAGIXQ9H6Y5 334 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 SLC39A1Q9NY26 324 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 ZNF639Q9UID6 485 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 RIMS3Q9UJD0 308 aa19.64■□□□□ 0.73
VPS28-208ENST00000527797 IGLV3-12A0A075B6K2 115 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 IGKV3D-11A0A0A0MRZ8 115 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 M0QX08 132 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 TPST1O60507 370 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 COQ9O75208 318 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 AGR2O95994 175 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 PCBP3P57721 371 aaKnown RBP19.63■□□□□ 0.73
VPS28-208ENST00000527797 RHAGQ02094 409 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 EXOSC7Q15024 291 aaKnown RBP19.63■□□□□ 0.73
VPS28-208ENST00000527797 TRIP6Q15654 476 aaKnown RBP19.63■□□□□ 0.73
VPS28-208ENST00000527797 ATAD3BQ5T9A4 648 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 CDCP2Q5VXM1 449 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 ZNF385CQ66K41 422 aaPredicted RBP19.63■□□□□ 0.73
VPS28-208ENST00000527797 ZCCHC12Q6PEW1 402 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 ZNF578Q96N58 590 aaPredicted RBP19.63■□□□□ 0.73
VPS28-208ENST00000527797 CTSFQ9UBX1 484 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 LOXL2Q9Y4K0 774 aa19.63■□□□□ 0.73
VPS28-208ENST00000527797 SUV39H1O43463 412 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 PDE9AO76083 593 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 PGM3O95394 542 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 AGXTP21549 392 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 FASP25445 335 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 RORAP35398 523 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 ZNF267Q14586 743 aaPredicted RBP19.62■□□□□ 0.73
VPS28-208ENST00000527797 TRIP10Q15642 601 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 MAPK11Q15759 364 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 SYPL1Q16563 259 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 ISXQ2M1V0 245 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 CYBRD1Q53TN4 286 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 PRSS58Q8IYP2 241 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 TMEM102Q8N9M5 508 aaPredicted RBP19.62■□□□□ 0.73
VPS28-208ENST00000527797 CDRT4Q8N9R6 151 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 OR52R1Q8NGF1 315 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 STT3BQ8TCJ2 826 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 SLC9A6Q92581 669 aa19.62■□□□□ 0.73
VPS28-208ENST00000527797 SLC35A4Q96G79 324 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms