RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 FAM83FQ8NEG4 500 aaPredicted RBP13□□□□□ -0.33
CPSF1-201ENST00000526271 IFT81Q8WYA0 676 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 TMEM41AQ96HV5 264 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 GPR78Q96P69 363 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 CPNE1Q99829 537 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 GALNT9Q9HCQ5 603 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 GALNT8Q9NY28 637 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 PHF11Q9UIL8 331 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 RNF11Q9Y3C5 154 aa13□□□□□ -0.33
CPSF1-201ENST00000526271 USF3Q68DE3 2245 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 C2orf92A0A1B0GVN3 265 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 OR6C76A6NM76 312 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 SUPT3HB4E1H0 165 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 H0YIV9 168 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 EIF3HO15372 352 aaKnown RBP eCLIP12.99□□□□□ -0.33
CPSF1-201ENST00000526271 NME6O75414 186 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-201ENST00000526271 SUPT3HO75486 399 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 LY6G6DO95868 133 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 IL2RAP01589 272 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 FAM58BPP0C7Q3 252 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 NR2F6P10588 404 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 ABCD3P28288 659 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 GP5P40197 560 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 PEX19P40855 299 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 TBL3Q12788 808 aaKnown RBP12.99□□□□□ -0.33
CPSF1-201ENST00000526271 NNATQ16517 81 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 ERCC6LQ2NKX8 1250 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 FAM111BQ6SJ93 734 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 C22orf34Q6ZV56 151 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 WDSUB1Q8N9V3 476 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 KCTD4Q8WVF5 259 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 TP53INP1Q96A56 240 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 CTHRC1Q96CG8 243 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 ART5Q96L15 291 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 SAYSD1Q9NPB0 183 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 MS4A12Q9NXJ0 267 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 NSMCE4AQ9NXX6 385 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 CLCF1Q9UBD9 225 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 OPTCQ9UBM4 332 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 MTRF1LQ9UGC7 380 aaKnown RBP12.99□□□□□ -0.33
CPSF1-201ENST00000526271 FETUBQ9UGM5 382 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 FOXD3Q9UJU5 478 aaPredicted RBP12.99□□□□□ -0.33
CPSF1-201ENST00000526271 CES1P1Q9UKY3 287 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 SPACA6W5XKT8 324 aa12.99□□□□□ -0.33
CPSF1-201ENST00000526271 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 DEFB108AA8MXU0 73 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 EEF1E1-BLOC1S5C9J1V9 151 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 EEF1E1O43324 174 aaKnown RBP12.98□□□□□ -0.33
CPSF1-201ENST00000526271 OR10H2O60403 315 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 TNFSF13O75888 250 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 SIX3O95343 332 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-201ENST00000526271 IL18BPO95998 194 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 LOXP28300 417 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-201ENST00000526271 CCKARP32238 428 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 OPRM1P35372 400 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 SLC12A2P55011 1212 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 KEAP1Q14145 624 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 SETDB1Q15047 1291 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 KBTBD12Q3ZCT8 623 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 TBCELQ5QJ74 424 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 CYS1Q717R9 158 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 STAG3L4Q8TBR4 150 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 ZPLD1Q8TCW7 415 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 ABTB1Q969K4 478 aaPredicted RBP12.98□□□□□ -0.33
CPSF1-201ENST00000526271 UBE2E3Q969T4 207 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 TSPAN17Q96FV3 270 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 CDK15Q96Q40 435 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 OR10A5Q9H207 317 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 CALHM2Q9HA72 323 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 SNX15Q9NRS6 342 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 ZNF639Q9UID6 485 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 NFU1Q9UMS0 254 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 HIVEP2P31629 2446 aa12.98□□□□□ -0.33
CPSF1-201ENST00000526271 OR7A17O14581 309 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 SNPHO15079 494 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 UGT2B11O75310 529 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 SNX4O95219 450 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 TGM6O95932 706 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 HEXAP06865 529 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 TMIGD3P0DMS9 266 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 SERPINB1P30740 379 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 STARP49675 285 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 RAP1GDS1P52306 607 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 ARFIP1P53367 373 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 GFRA1P56159 465 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 NKX6-1P78426 367 aaPredicted RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 BIKQ13323 160 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 CUL3Q13618 768 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 EXOSC7Q15024 291 aaKnown RBP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 CPSF6Q16630 551 aaKnown RBP eCLIP12.97□□□□□ -0.33
CPSF1-201ENST00000526271 FAM180BQ6P0A1 224 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 WDR93Q6P2C0 686 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 TMEM81Q6P7N7 255 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 ANGPTL8Q6UXH0 198 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 CLEC9AQ6UXN8 241 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 GOLGA7Q7Z5G4 137 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 LUZP2Q86TE4 346 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 RELL1Q8IUW5 271 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 TAGAPQ8N103 731 aa12.97□□□□□ -0.33
CPSF1-201ENST00000526271 L3MBTL4Q8NA19 623 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms