RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 TLX2O43763 284 aaPredicted RBP20.02■□□□□ 0.79
VPS28-205ENST00000526204 PAK4O96013 591 aaPredicted RBP20.02■□□□□ 0.79
VPS28-205ENST00000526204 HMGN2P05204 90 aaKnown RBP20.02■□□□□ 0.79
VPS28-205ENST00000526204 FHP07954 510 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 TSFMP43897 325 aaKnown RBP20.02■□□□□ 0.79
VPS28-205ENST00000526204 DOC2BQ14184 412 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 GINS1Q14691 196 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 ABHD17CQ6PCB6 329 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 NUDT18Q6ZVK8 323 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 CACUL1Q86Y37 369 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 ACOT4Q8N9L9 421 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 ST13P5Q8NFI4 369 aaPredicted RBP20.02■□□□□ 0.79
VPS28-205ENST00000526204 ARMC5Q96C12 935 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 TXNDC15Q96J42 360 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 ENTPD4Q9Y227 616 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 KCNK6Q9Y257 313 aa20.02■□□□□ 0.79
VPS28-205ENST00000526204 A0A1W2PR48 441 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 GLOD5A6NK44 160 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 ATP5A1P25705 553 aaKnown RBP20.01■□□□□ 0.79
VPS28-205ENST00000526204 SMSP52788 366 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 PRR5P85299 388 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 CDK5Q00535 292 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 HYAL2Q12891 473 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 ADGRD2Q7Z7M1 963 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 GJD3Q8N144 294 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 GALNT6Q8NCL4 622 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 MORN4Q8NDC4 146 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 OR2L5Q8NG80 312 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 OR8K5Q8NH50 307 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 KCNS3Q9BQ31 491 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 SARGQ9BW04 601 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 BTBD1Q9H0C5 482 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 SFXN1Q9H9B4 322 aa20.01■□□□□ 0.79
VPS28-205ENST00000526204 COL4A3Q01955 1670 aa20■□□□□ 0.79
VPS28-205ENST00000526204 WASHC1A8K0Z3 465 aa20■□□□□ 0.79
VPS28-205ENST00000526204 PGRMC2O15173 223 aa20■□□□□ 0.79
VPS28-205ENST00000526204 PRKYO43930 277 aa20■□□□□ 0.79
VPS28-205ENST00000526204 TPST2O60704 377 aa20■□□□□ 0.79
VPS28-205ENST00000526204 RAB36O95755 333 aa20■□□□□ 0.79
VPS28-205ENST00000526204 FCARP24071 287 aa20■□□□□ 0.79
VPS28-205ENST00000526204 IFNGR2P38484 337 aa20■□□□□ 0.79
VPS28-205ENST00000526204 BUD31P41223 144 aaPredicted RBP20■□□□□ 0.79
VPS28-205ENST00000526204 CRYBB2P43320 205 aa20■□□□□ 0.79
VPS28-205ENST00000526204 RORCP51449 518 aa20■□□□□ 0.79
VPS28-205ENST00000526204 SGCGQ13326 291 aa20■□□□□ 0.79
VPS28-205ENST00000526204 LASP1Q14847 261 aaKnown RBP20■□□□□ 0.79
VPS28-205ENST00000526204 KLHL22Q53GT1 634 aa20■□□□□ 0.79
VPS28-205ENST00000526204 SYT14P1Q58G82 188 aa20■□□□□ 0.79
VPS28-205ENST00000526204 WASH2PQ6VEQ5 465 aa20■□□□□ 0.79
VPS28-205ENST00000526204 WDR53Q7Z5U6 358 aaPredicted RBP20■□□□□ 0.79
VPS28-205ENST00000526204 IQCHQ86VS3 1027 aa20■□□□□ 0.79
VPS28-205ENST00000526204 OR52E1Q8NGJ3 308 aa20■□□□□ 0.79
VPS28-205ENST00000526204 SSR3Q9UNL2 185 aa20■□□□□ 0.79
VPS28-205ENST00000526204 TRAPPC4Q9Y296 219 aa20■□□□□ 0.79
VPS28-205ENST00000526204 ATG4BQ9Y4P1 393 aa20■□□□□ 0.79
VPS28-205ENST00000526204 CCDC88CQ9P219 2028 aa20■□□□□ 0.79
VPS28-205ENST00000526204 IRGMA1A4Y4 181 aa20■□□□□ 0.79
VPS28-205ENST00000526204 ZNF670-ZNF695F2Z2N8 137 aa20■□□□□ 0.79
VPS28-205ENST00000526204 SYT5O00445 386 aa20■□□□□ 0.79
VPS28-205ENST00000526204 CTDSP2O14595 271 aa20■□□□□ 0.79
VPS28-205ENST00000526204 PRICKLE3O43900 615 aaPredicted RBP20■□□□□ 0.79
VPS28-205ENST00000526204 EPPINO95925 133 aa20■□□□□ 0.79
VPS28-205ENST00000526204 APOA1P02647 267 aa20■□□□□ 0.79
VPS28-205ENST00000526204 HBQ1P09105 142 aa20■□□□□ 0.79
VPS28-205ENST00000526204 CSNK2A2P19784 350 aaPredicted RBP20■□□□□ 0.79
VPS28-205ENST00000526204 MPIP34949 423 aa20■□□□□ 0.79
VPS28-205ENST00000526204 RPS19P39019 145 aaKnown RBP20■□□□□ 0.79
VPS28-205ENST00000526204 FUT5Q11128 374 aa20■□□□□ 0.79
VPS28-205ENST00000526204 GPAT3Q53EU6 434 aa20■□□□□ 0.79
VPS28-205ENST00000526204 TANGO2Q6ICL3 276 aa20■□□□□ 0.79
VPS28-205ENST00000526204 GET4Q7L5D6 327 aaPredicted RBP20■□□□□ 0.79
VPS28-205ENST00000526204 CCDC116Q8IYX3 515 aa20■□□□□ 0.79
VPS28-205ENST00000526204 IQCF1Q8N6M8 205 aa20■□□□□ 0.79
VPS28-205ENST00000526204 CNRIP1Q96F85 164 aaPredicted RBP20■□□□□ 0.79
VPS28-205ENST00000526204 LRR1Q96L50 414 aa20■□□□□ 0.79
VPS28-205ENST00000526204 SMURF1Q9HCE7 757 aa20■□□□□ 0.79
VPS28-205ENST00000526204 SLC6A20Q9NP91 592 aa20■□□□□ 0.79
VPS28-205ENST00000526204 ZFR2Q9UPR6 939 aaKnown RBP20■□□□□ 0.79
VPS28-205ENST00000526204 SLC17A4Q9Y2C5 497 aa20■□□□□ 0.79
VPS28-205ENST00000526204 A0A1W2PP55 124 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 HYKKA2RU49 373 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 SNTNA6NMZ2 147 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 SNPHO15079 494 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 LATO43561 262 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 PRKRAO75569 313 aaKnown RBP19.99■□□□□ 0.79
VPS28-205ENST00000526204 MAN2A2P49641 1150 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 RPS21P63220 83 aaKnown RBP19.99■□□□□ 0.79
VPS28-205ENST00000526204 EFNB1P98172 346 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 ENPP2Q13822 863 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 FGL2Q14314 439 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 SLC48A1Q6P1K1 146 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 VITQ6UXI7 678 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 BCDIN3DQ7Z5W3 292 aaKnown RBP19.99■□□□□ 0.79
VPS28-205ENST00000526204 OR2L3Q8NG85 312 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 YIPF4Q9BSR8 244 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 GIMAP4Q9NUV9 329 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 CALML5Q9NZT1 146 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 TESQ9UGI8 421 aaKnown RBP19.99■□□□□ 0.79
VPS28-205ENST00000526204 SERGEFQ9UGK8 458 aa19.99■□□□□ 0.79
VPS28-205ENST00000526204 EMC8O43402 210 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms