RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SPIN4Q56A73 249 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 ARL13AQ5H913 290 aaPredicted RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 C6orf163Q5TEZ5 329 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 ANKRD26P1Q6NSI1 321 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 NOXRED1Q6NXP6 359 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 Q6ZSR9 355 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 TICAM1Q8IUC6 712 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 LRRC25Q8N386 305 aaPredicted RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 POGLUT1Q8NBL1 392 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 C7orf57Q8NEG2 295 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 OR5M9Q8NGP3 310 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 CLHC1Q8NHS4 586 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 ITLN2Q8WWU7 325 aaPredicted RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 C11orf24Q96F05 449 aaPredicted RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 PKNOX2Q96KN3 472 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 SMC6Q96SB8 1091 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 FAM173AQ9BQD7 235 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 ITPAQ9BY32 194 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 TUBB1Q9H4B7 451 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 ZNF395Q9H8N7 513 aaPredicted RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 SH2D2AQ9NP31 389 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 SLC35C2Q9NQQ7 365 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 BAIAP2L1Q9UHR4 511 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 ZNF639Q9UID6 485 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 EXO1Q9UQ84 846 aaKnown RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 NPFFR2Q9Y5X5 522 aa10.58□□□□□ -0.72
VCAN-212ENST00000515397 CHCHD2Q9Y6H1 151 aaPredicted RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.58□□□□□ -0.72
VCAN-212ENST00000515397 SERTM1A2A2V5 107 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 OR6C76A6NM76 312 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 ADAM10O14672 748 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 AKAP10O43572 662 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 ATP1B1P05026 303 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 JUNP05412 331 aaKnown RBP10.57□□□□□ -0.72
VCAN-212ENST00000515397 DRD2P14416 443 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 GPX3P22352 226 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 GRNP28799 593 aaKnown RBP10.57□□□□□ -0.72
VCAN-212ENST00000515397 TRPC1P48995 793 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 CASP6P55212 293 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 PER3P56645 1201 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 KCNJ2P63252 427 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 GALNTL6Q49A17 601 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 CES4AQ5XG92 561 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 TRIM46Q7Z4K8 759 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 MRGPRGQ86SM5 289 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 CD163Q86VB7 1156 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 LURAP1LQ8IV03 231 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 DDIASQ8IXT1 998 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 TAGAPQ8N103 731 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 RIBC1Q8N443 379 aaPredicted RBP10.57□□□□□ -0.72
VCAN-212ENST00000515397 RPRMLQ8N4K4 120 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 GOLM1Q8NBJ4 401 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 PAQR8Q8TEZ7 354 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 NUDT8Q8WV74 236 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 DIO2Q92813 273 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 RRAGDQ9NQL2 400 aaPredicted RBP10.57□□□□□ -0.72
VCAN-212ENST00000515397 MID2Q9UJV3 735 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 CNOT11Q9UKZ1 510 aaKnown RBP10.57□□□□□ -0.72
VCAN-212ENST00000515397 TRAF6Q9Y4K3 522 aa10.57□□□□□ -0.72
VCAN-212ENST00000515397 RGS16O15492 202 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 TYROBPO43914 113 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 LYPLA1O75608 230 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 GLSO94925 669 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 ABCB1P08183 1280 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 SNRPB2P08579 225 aaKnown RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 DDCP20711 480 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 EFNA1P20827 205 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 ABCD3P28288 659 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 DCTP40126 519 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 EMDP50402 254 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 ZNF763Q0D2J5 394 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 HEPACAMQ14CZ8 416 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 KIAA0040Q15053 153 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 NTRK2Q16620 822 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 RFTN2Q52LD8 501 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 ZNF628Q5EBL2 1059 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 SH2D4BQ5SQS7 431 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 CEP85LQ5SZL2 805 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 SP5Q6BEB4 398 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 FAM71E1Q6IPT2 247 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 GALNT18Q6P9A2 607 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 Q6ZPB1 254 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 GK5Q6ZS86 529 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 WDR53Q7Z5U6 358 aaPredicted RBP10.56□□□□□ -0.72
VCAN-212ENST00000515397 EXOC3L1Q86VI1 746 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 SLC22A16Q86VW1 577 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 CNPY4Q8N129 248 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 MREGQ8N565 214 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 SLC15A4Q8N697 577 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 OR7G2Q8NG99 324 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 OR7G1Q8NGA0 311 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.56□□□□□ -0.72
VCAN-212ENST00000515397 TP53INP1Q96A56 240 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 CTHRC1Q96CG8 243 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 TSSK3Q96PN8 268 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 BBS4Q96RK4 519 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 LDAHQ9H6V9 325 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 IL1RL2Q9HB29 575 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 LRTM1Q9HBL6 345 aa10.56□□□□□ -0.72
VCAN-212ENST00000515397 MKS1Q9NXB0 559 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms