RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 SORBS2O94875 1100 aaKnown RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 CBX7O95931 251 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 LAMP1P11279 417 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 IDO1P14902 403 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 CLNS1AP54105 237 aaKnown RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 PSPHP78330 225 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 MRPS35P82673 323 aaKnown RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 SRSF11Q05519 484 aaKnown RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 RPS6KA2Q15349 733 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 LTB4RQ15722 352 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 INAQ16352 499 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 GSTA3Q16772 222 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 LSM12Q3MHD2 195 aaKnown RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 SLC9B1Q4ZJI4 515 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 ZNF385BQ569K4 471 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 ANKRD26P1Q6NSI1 321 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 FAM47EQ6ZV65 393 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 MAVSQ7Z434 540 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 KRTCAP2Q8N6L1 136 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 ZNF441Q8N8Z8 693 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 OR7A2PQ8NGA2 310 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 OR52R1Q8NGF1 315 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 C16orf52Q8NHV5 167 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 STON2Q8WXE9 905 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 ADIPOR1Q96A54 375 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 TMEM125Q96AQ2 219 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 CIDECQ96AQ7 238 aaPredicted RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 ELP4Q96EB1 424 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 SGCZQ96LD1 299 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 C5orf34Q96MH7 638 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 GAL3ST4Q96RP7 486 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 SIKE1Q9BRV8 207 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 BHLHE41Q9C0J9 482 aaPredicted RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 LIN28AQ9H9Z2 209 aaKnown RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 HPF1Q9NWY4 346 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 TAS2R9Q9NYW1 312 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 C19orf53Q9UNZ5 99 aaPredicted RBP13.21□□□□□ -0.29
NUP54-216ENST00000514901 PCDHGA10Q9Y5H3 936 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 CSAG2Q9Y5P2 127 aa13.21□□□□□ -0.29
NUP54-216ENST00000514901 ZNF462Q96JM2 2506 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 TTC36A6NLP5 189 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 TTLL8A6PVC2 850 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 UBDO15205 165 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 ACOX3O15254 700 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 POLR3GO15318 223 aaPredicted RBP13.2□□□□□ -0.3
NUP54-216ENST00000514901 EDF1O60869 148 aaKnown RBP13.2□□□□□ -0.3
NUP54-216ENST00000514901 F10P00742 488 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 DRD5P21918 477 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 GPC1P35052 558 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 SOX18P35713 384 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 PPICP45877 212 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 EMDP50402 254 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 NRG3P56975 720 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 EXOSC7Q15024 291 aaKnown RBP13.2□□□□□ -0.3
NUP54-216ENST00000514901 DPY19L1Q2PZI1 675 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 ZNF766Q5HY98 468 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 FHL5Q5TD97 284 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 ZNF468Q5VIY5 522 aaPredicted RBP13.2□□□□□ -0.3
NUP54-216ENST00000514901 SPINK14Q6IE38 97 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 SLC25A25Q6KCM7 469 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 ZNF605Q86T29 641 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 CYP4Z2PQ8N1L4 340 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 OR2L13Q8N349 312 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 Q8NA96 180 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 TMEM178AQ8NBL3 297 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 MDS2Q8NDY4 140 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 VPS37AQ8NEZ2 397 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 OR7G2Q8NG99 324 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 OR8J2Q8NGG1 315 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 OR5P2Q8WZ92 322 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 TESCQ96BS2 214 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 HSPBAP1Q96EW2 488 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 CCDC28BQ9BUN5 200 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 DUSP26Q9BV47 211 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 C3orf14Q9HBI5 128 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 TCF7L2Q9NQB0 619 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 DDX18Q9NVP1 670 aaKnown RBP13.2□□□□□ -0.3
NUP54-216ENST00000514901 AIG1Q9NVV5 245 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 ANKRD10Q9NXR5 420 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 ERVK-11Q9UQG0 969 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 GPR45Q9Y5Y3 372 aa13.2□□□□□ -0.3
NUP54-216ENST00000514901 A0A1W2PRB8 838 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 ANKRD28O15084 1053 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 SLC25A12O75746 678 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 NEURL1O76050 574 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 SP1P08047 785 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 ALDOCP09972 364 aaKnown RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 GPX3P22352 226 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 PTGER1P34995 402 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 SOX3P41225 446 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 MC3RP41968 323 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 IDH3AP50213 366 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 NR0B1P51843 470 aaKnown RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 AQP5P55064 265 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 IRX1P78414 480 aaPredicted RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 HSPB3Q12988 150 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 DUSP8Q13202 625 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 PGS1Q32NB8 556 aa13.19□□□□□ -0.3
NUP54-216ENST00000514901 PDCD4Q53EL6 469 aaKnown RBP13.19□□□□□ -0.3
NUP54-216ENST00000514901 ANXA8L1Q5VT79 327 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms