RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 TRBV5-3A0A0A0MS03 114 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 CD8B2A6NJW9 211 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 FAM227AF5H4B4 570 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 TLR4O00206 839 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 WISP3O95389 354 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 GJB1P08034 283 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 CD8BP10966 210 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 PPP3CBP16298 524 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 NFYBP25208 207 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 ETV5P41161 510 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 GPR143P51810 404 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 TIAL1Q01085 375 aaKnown RBP eCLIP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 MLLT1Q03111 559 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 WDR53Q7Z5U6 358 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 CMIPQ8IY22 773 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 MEIOBQ8N635 442 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 ADAMTS19Q8TE59 1207 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 GMLQ99445 158 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 ENKD1Q9H0I2 346 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 MROH8Q9H579 483 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 ZFP57Q9NU63 452 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 RPS6KB2Q9UBS0 482 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 FNDC3AQ9Y2H6 1198 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 DENND4AQ7Z401 1863 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 SHISA3A0PJX4 238 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 WASH3PC4AMC7 463 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 SCAMP2O15127 329 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 KCNK5O95279 499 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 EIF2S3P41091 472 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 MAXP61244 160 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 BLOC1S1P78537 153 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 PRR5P85299 388 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 ZXDBP98169 803 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 DGKZQ13574 1117 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 TMEM44Q2T9K0 475 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 PKDCCQ504Y2 493 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 NHLRC1Q6VVB1 395 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 DCUN1D3Q8IWE4 304 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 CFAP206Q8IYR0 622 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 FAM46DQ8NEK8 389 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 OR10H5Q8NGA6 315 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC25A28Q96A46 364 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 MTG2Q9H4K7 406 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF69Q9UC07 566 aa11.43□□□□□ -0.58
LIMCH1-213ENST00000511496 PRAMEF2O60811 474 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 PIRTP0C851 137 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 PEPDP12955 493 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 EDN3P14138 238 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 SEC61A1P61619 476 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF660Q6AZW8 331 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 TSPAN33Q86UF1 283 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 GPSM1Q86YR5 675 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CDAN1Q8IWY9 1227 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 DBF4BQ8NFT6 615 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 RNFT2Q96EX2 444 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ART5Q96L15 291 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 HHIPQ96QV1 700 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 PANX1Q96RD7 426 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 REEP4Q9H6H4 257 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 AGAP14A8MT82 685 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC31A2O15432 143 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 NR2F6P10588 404 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 SPI1P17947 270 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CHI3L1P36222 383 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CTSOP43234 321 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 MVDP53602 400 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CRISP1P54107 249 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 KCNJ10P78508 379 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 RIPPLY1Q0D2K3 151 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 SNTB2Q13425 540 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 HABP2Q14520 560 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 DCAF15Q66K64 600 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 MPZL3Q6UWV2 235 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ANGPTL8Q6UXH0 198 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 HFE2Q6ZVN8 426 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 SLC30A8Q8IWU4 369 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ZSCAN1Q8NBB4 408 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 FAM193BQ96PV7 902 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 FCRL5Q96RD9 977 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 RSRP1Q9BUV0 290 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ZCCHC2Q9C0B9 1178 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 TMEM45AQ9NWC5 275 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 PHLPP1O60346 1717 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 UPK3BL1B0FP48 263 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 UPK3BL2E5RIL1 263 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 PAK4O96013 591 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ADH1CP00326 375 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 EIF4EP06730 217 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 COX5BP10606 129 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 MUC1P15941 1255 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CCR1P32246 355 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 PITPNBP48739 271 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ANKRD39Q53RE8 183 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ZBTB8OSQ8IWT0 167 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CELF5Q8N6W0 485 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 GPR21Q99679 349 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 FUZQ9BT04 418 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 LINC00597Q9H2U6 94 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 CLMPQ9H6B4 373 aa11.42□□□□□ -0.58
LIMCH1-213ENST00000511496 ZNF302Q9NR11 478 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms