RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 SEM1Q6ZVN7 128 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 TAOK1Q7L7X3 1001 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 CHMP1BQ7LBR1 199 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 ZNF441Q8N8Z8 693 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 OR14L1PQ8NHC6 308 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 NXNL1Q96CM4 212 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 TMCO6Q96DC7 493 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 DACH2Q96NX9 599 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 RBM24Q9BX46 236 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 OSBPL11Q9BXB4 747 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 UGT2B28Q9BY64 529 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 EPB41L4BQ9H329 900 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 UBQLN3Q9H347 655 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 CPSF2Q9P2I0 782 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 PRODH2Q9UF12 536 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 BCAP29Q9UHQ4 241 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 NFU1Q9UMS0 254 aa19.23■□□□□ 0.67
SQSTM1-210ENST00000506042 C1orf226A1L170 272 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 TP73O15350 636 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 TMPRSS11DO60235 418 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 EEDO75530 441 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 PRKRAO75569 313 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 PPM1BO75688 479 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 CBR3O75828 277 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 BMP7P18075 431 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 ABCD3P28288 659 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 MAPK12P53778 367 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 ADAM8P78325 824 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 PLCXD2Q0VAA5 305 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 SHEQ5VZ18 495 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 GBP7Q8N8V2 638 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 L3MBTL4Q8NA19 623 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 NAXEQ8NCW5 288 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 SMPDL3BQ92485 455 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 FAIM2Q9BWQ8 316 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 BRINP2Q9C0B6 783 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 LIME1Q9H400 295 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 ELOVL6Q9H5J4 265 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 SLC6A5Q9Y345 797 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 AKAP9Q99996 3911 aa19.22■□□□□ 0.67
SQSTM1-210ENST00000506042 ITPR3Q14573 2671 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 GNB5O14775 395 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 ABCB7O75027 752 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 SMIM24O75264 130 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 BCAS2O75934 225 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 KLHL2O95198 593 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 CPMP14384 443 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 CPN1P15169 458 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 CSNK2A2P19784 350 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 TYK2P29597 1187 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 MAGEA4P43358 317 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 SERPINB8P50452 374 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 PLTPP55058 493 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 MRPS22P82650 360 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 WIPI1Q5MNZ9 446 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 FRG2Q64ET8 278 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 GOLGA7Q7Z5G4 137 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 IFNEQ86WN2 208 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 TRPC4APQ8TEL6 797 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 FBF1Q8TES7 1133 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 KCTD4Q8WVF5 259 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 WDYHV1Q96HA8 205 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 C18orf12Q96KH6 178 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 FRG2BQ96QU4 278 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 ZNF780BQ9Y6R6 833 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 ANKHD1Q8IWZ3 2542 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 NINQ8N4C6 2090 aa19.21■□□□□ 0.67
SQSTM1-210ENST00000506042 ATE1O95260 518 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 RBP1P09455 135 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 TMEM64Q6YI46 380 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 SAMD14Q8IZD0 417 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 RNF175Q8N4F7 328 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 FAM83FQ8NEG4 500 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 DOK4Q8TEW6 326 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 WNT2BQ93097 391 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 ADIPOR1Q96A54 375 aa19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 LCORQ96JN0 433 aaPredicted RBP19.2■□□□□ 0.66
SQSTM1-210ENST00000506042 NCKAP5O14513 1909 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 A0A096LPK6 155 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 C2P06681 752 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 MTHFD2P13995 350 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 PTPN6P29350 595 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 UAP1Q16222 522 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 MROH9Q5TGP6 573 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 OR2A2Q6IF42 318 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 P3H2Q8IVL5 708 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 ZNF615Q8N8J6 731 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 WDR20Q8TBZ3 569 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 ZNF717Q9BY31 904 aaPredicted RBP19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 ZNF226Q9NYT6 803 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 EXO1Q9UQ84 846 aaKnown RBP19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 RNF11Q9Y3C5 154 aa19.19■□□□□ 0.66
SQSTM1-210ENST00000506042 SH3D21A4FU49 640 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 SNPHO15079 494 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 PGRMC2O15173 223 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 GBAP04062 536 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 ATP1B1P05026 303 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 KLK1P06870 262 aa19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 ABCB1P08183 1280 aaPredicted RBP19.18■□□□□ 0.66
SQSTM1-210ENST00000506042 HOXB4P17483 251 aaPredicted RBP19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms