RNA–Protein interactions for RNA: ENST00000503004.5

CLDND1-208, Transcript of claudin domain containing 1, human

APPRIS P1 TSL 1 (best) BASIC

Gene CLDND1, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-208	ENST00000503004	EAF1	Q96JC9	268 aa	Predicted RBP	4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	ARL5B	Q96KC2	179 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	RDH12	Q96NR8	316 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	PKP4	Q99569	1192 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	KCNS3	Q9BQ31	491 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	DUSP26	Q9BV47	211 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	ACTR6	Q9GZN1	396 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	MAGIX	Q9H6Y5	334 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	TMEM184C	Q9NVA4	438 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	FZD4	Q9ULV1	537 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	KLHL20	Q9Y2M5	609 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	PCDHGB6	Q9Y5F9	930 aa		4.9	□□□□□ -1.62
CLDND1-208	ENST00000503004	WASH3P	C4AMC7	463 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	WWP2	O00308	870 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	SLC16A6	O15403	523 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	TGFB1	P01137	390 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	CAT	P04040	527 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	FABP3	P05413	133 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	CD36	P16671	472 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	HOXA9	P31269	272 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	IRS1	P35568	1242 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	NNMT	P40261	264 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	OR1E2	P47887	323 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	DEFA1	P59665	94 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	DEFA3	P59666	94 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	TBPL1	P62380	186 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	IKZF1	Q13422	519 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	KRR1	Q13601	381 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	SSPN	Q14714	243 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	ZNF385B	Q569K4	471 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	CPTP	Q5TA50	214 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	SHQ1	Q6PI26	577 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	XKRX	Q6PP77	449 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	GRASP	Q7Z6J2	395 aa	Predicted RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	B3GNT8	Q7Z7M8	397 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	CACUL1	Q86Y37	369 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	STX12	Q86Y82	276 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	TRAPPC5	Q8IUR0	188 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	CCDC71	Q8IV32	467 aa	Predicted RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	SFTPA1	Q8IWL2	248 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	TIGD4	Q8IY51	512 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	CFAP206	Q8IYR0	622 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	NAGS	Q8N159	534 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	TRAM1L1	Q8N609	369 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	ZNF740	Q8NDX6	193 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	VN1R2	Q8NFZ6	395 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	OR8J2	Q8NGG1	315 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	OR52J3	Q8NH60	311 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	OR5AK3P	Q8NH89	298 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	DNAJB8	Q8NHS0	232 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	RBPMS	Q93062	196 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	MRPL48	Q96GC5	212 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	OR2A14	Q96R47	310 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	COPS4	Q9BT78	406 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	OR2AG1	Q9H205	316 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	NIPAL2	Q9H841	368 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	AMBN	Q9NP70	447 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	GPATCH2	Q9NW75	528 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	IL36A	Q9UHA7	158 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	ACSL6	Q9UKU0	697 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	EXO1	Q9UQ84	846 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	RUVBL1	Q9Y265	456 aa	Known RBP	4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	ORC6	Q9Y5N6	252 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	NUMA1	Q14980	2115 aa		4.9	□□□□□ -1.63
CLDND1-208	ENST00000503004	SLC5A10	A0PJK1	596 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	MGAT4D	A6NG13	374 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	DBX1	A6NMT0	343 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	EFCAB7	A8K855	629 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004		H0YIV9	168 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004		H3BM21	787 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	SCAMP2	O15127	329 aa	Known RBP	4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	SLC16A5	O15375	505 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	WDPCP	O95876	746 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	C1QB	P02746	253 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	ETFA	P13804	333 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	EPCAM	P16422	314 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	ACVR2A	P27037	513 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	CD6	P30203	668 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	TRHR	P34981	398 aa	Predicted RBP	4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	MMP12	P39900	470 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	CRAT	P43155	626 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	PCP4	P48539	62 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	PRLHR	P49683	370 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	CLCNKA	P51800	687 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	CAPZA1	P52907	286 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	PER3	P56645	1201 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	HBA1	P69905	142 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	LGALS3BP	Q08380	585 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	ZNF77	Q15935	545 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	DUSP6	Q16828	381 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	ZNF805	Q5CZA5	627 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	COX20	Q5RI15	118 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	KDM4D	Q6B0I6	523 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	GPR153	Q6NV75	609 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	TRIL	Q7L0X0	811 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	GPR155	Q7Z3F1	870 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	TECPR1	Q7Z6L1	1165 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	KRT73	Q86Y46	540 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	CCDC116	Q8IYX3	515 aa		4.89	□□□□□ -1.63
CLDND1-208	ENST00000503004	MMP21	Q8N119	569 aa		4.89	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms