RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DNASE1P24855 282 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IMPA1P29218 277 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 GP2P55259 537 aaKnown RBP10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 ACVR1Q04771 509 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 SLC9A5Q14940 896 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 UGT3A2Q3SY77 523 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 C10orf62Q5T681 223 aaPredicted RBP10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CEACAM20Q6UY09 585 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 C11orf65Q8NCR3 313 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CCL4L1Q8NHW4 92 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 HHIPQ96QV1 700 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IL4I1Q96RQ9 567 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RSPH9Q9H1X1 276 aaPredicted RBP10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 IKZF5Q9H5V7 419 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 NARFLQ9H6Q4 476 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 RANBP3Q9H6Z4 567 aaPredicted RBP10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 CD93Q9NPY3 652 aa10.21□□□□□ -0.77
MSH5-SAPCD1-207ENST00000493662 POM121BA6NF01 834 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 AP3D1O14617 1153 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RFPL3O75679 317 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FCER2P06734 321 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MMP12P39900 470 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HNRNPA0Q13151 305 aaKnown RBP10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SNTA1Q13424 505 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RCAN2Q14206 197 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TATDN3Q17R31 274 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FAM217AQ8IXS0 508 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 COQ8AQ8NI60 647 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SAMD11Q96NU1 681 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 BEX1Q9HBH7 125 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 OR10H2O60403 315 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ANXA3P12429 323 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IL1RNP18510 177 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NT5EP21589 574 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ACSL1P33121 698 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NUDT1P36639 197 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TGFBR1P36897 503 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 AVPR1BP47901 424 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PGDP52209 483 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CSTF1Q05048 431 aaKnown RBP10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TRIM40Q6P9F5 258 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 Q8N402 240 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PYURFQ96I23 114 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HSH2DQ96JZ2 352 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CSF3RQ99062 836 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C11orf16Q9NQ32 467 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DOCK8Q8NF50 2099 aa10.21□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C1GALT1C1LP0DN25 315 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 JUPP14923 745 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NTSR1P30989 418 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 MNX1P50219 401 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CDK3Q00526 305 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SLAMF1Q13291 335 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IRF4Q15306 451 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RPS26P11Q5JNZ5 115 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FAM83HQ6ZRV2 1179 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NAGSQ8N159 534 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 GDPD1Q8N9F7 314 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DYNC2LI1Q8TCX1 351 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 UBE2E3Q969T4 207 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RERGQ96A58 199 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ART5Q96L15 291 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CPEB1Q9BZB8 566 aaKnown RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 COPZ2Q9P299 210 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TMPRSS11EQ9UL52 423 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SVILO95425 2214 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 L7N2F9 121 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CBSLP0DN79 551 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CD9P21926 228 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CBSP35520 551 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 RPS5P46782 204 aaKnown RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CCR8P51685 355 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IFITM2Q01629 132 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 IQCCQ4KMZ1 466 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FLYWCH1Q4VC44 716 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TOR2AQ5JU69 321 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 USP53Q70EK8 1073 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 DCUN1D3Q8IWE4 304 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ABCA7Q8IZY2 2146 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C7orf57Q8NEG2 295 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 TSPEARQ8WU66 669 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF707Q96C28 371 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF285Q96NJ3 590 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NEDD4LQ96PU5 975 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CRISPLD2Q9H0B8 497 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 HCN2Q9UL51 889 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 SPIN1Q9Y657 262 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 A0A096LPI6 279 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 METTL15A6NJ78 407 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 FRS3O43559 492 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 ZNF821O75541 412 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 NUDT14O95848 222 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 INHBBP09529 407 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 C21orf33P30042 268 aaPredicted RBP10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 CLEC12AQ5QGZ9 265 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 STX12Q86Y82 276 aa10.2□□□□□ -0.78
MSH5-SAPCD1-207ENST00000493662 PJA1Q8NG27 643 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms