RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 CXorf21Q9HAI6 301 aa12.9□□□□□ -0.34
PRPF40A-211ENST00000493468 PLAC1Q9HBJ0 212 aa12.9□□□□□ -0.34
PRPF40A-211ENST00000493468 POPDC3Q9HBV1 291 aa12.9□□□□□ -0.34
PRPF40A-211ENST00000493468 PPANQ9NQ55 473 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-211ENST00000493468 MAPRE3Q9UPY8 281 aa12.9□□□□□ -0.34
PRPF40A-211ENST00000493468 EXO1Q9UQ84 846 aaKnown RBP12.9□□□□□ -0.34
PRPF40A-211ENST00000493468 NCF1BA6NI72 391 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 NCF1CA8MVU1 366 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 RNF223E7ERA6 249 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 PHF1O43189 567 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 PPM1BO75688 479 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 TGM6O95932 706 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 TGFB1P01137 390 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 NCF1P14598 390 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 KRT15P19012 456 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 EPORP19235 508 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 GMPRP36959 345 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 PTGDSP41222 190 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 HSPA7P48741 367 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 CLDN18P56856 261 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 IRF8Q02556 426 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 CHIT1Q13231 466 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 FGFBP1Q14512 234 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 ZNF460Q14592 562 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 CYP1B1Q16678 543 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 CLEC12BQ2HXU8 276 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 KBTBD12Q3ZCT8 623 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 BEX5Q5H9J7 111 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 SULT1C3Q6IMI6 304 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 ZNF704Q6ZNC4 412 aaPredicted RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 SH2D5Q6ZV89 423 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 ZNF611Q8N823 705 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 HGDQ93099 445 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 MAGOHBQ96A72 148 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 RGMAQ96B86 450 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 PGM2Q96G03 612 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 DERL2Q9GZP9 239 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 SERHLQ9NQF3 203 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 LYARQ9NX58 379 aaKnown RBP12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 PSD3Q9NYI0 1048 aa12.89□□□□□ -0.35
PRPF40A-211ENST00000493468 FAM95CA0A1B0GW59 222 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 PLPP1O14494 284 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 ICOSLGO75144 302 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 BANF1O75531 89 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 PRKRAO75569 313 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 NR2F6P10588 404 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 CD8BP10966 210 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 SRD5A2P31213 254 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 NR1H2P55055 460 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 TAS2R39P59534 338 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 VEZF1Q14119 521 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 FRG1Q14331 258 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 BCL2A1Q16548 175 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 CHRFAM7AQ494W8 412 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 MSS51Q4VC12 460 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 MRM1Q6IN84 353 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 MED27Q6P2C8 311 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 CCDC137Q6PK04 289 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 LRRC70Q7Z2Q7 622 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 ZNF550Q7Z398 422 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 NUP54Q7Z3B4 507 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 BTLAQ7Z6A9 289 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 ZC3HC1Q86WB0 502 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 IGDCC3Q8IVU1 814 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 GALNT12Q8IXK2 581 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 CNEP1R1Q8N9A8 125 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 PDPRQ8NCN5 879 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 OR7G3Q8NG95 312 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 OR7G1Q8NGA0 311 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 CENPKQ9BS16 269 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 SORBS1Q9BX66 1292 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 REG4Q9BYZ8 158 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 OPN3Q9H1Y3 402 aaPredicted RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 OR10A5Q9H207 317 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 TAS2R10Q9NYW0 307 aa12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 MRPS18CQ9Y3D5 142 aaKnown RBP12.88□□□□□ -0.35
PRPF40A-211ENST00000493468 A0A087X1B8 175 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 FRG2CA6NGY1 282 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 SLC22A20A6NK97 555 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 SAP18O00422 153 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 HS3ST1O14792 307 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 EMC8O43402 210 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 CGAP01215 116 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 FAM157CP0CG43 387 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 PPP3CBP16298 524 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 GPX3P22352 226 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 KIR2DL2P43627 348 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 RAP1GDS1P52306 607 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 STEAP4Q687X5 459 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 TRMT10BQ6PF06 316 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 P4HA3Q7Z4N8 544 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 PRR22Q8IZ63 422 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 WDSUB1Q8N9V3 476 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 MAPK1IP1LQ8NDC0 245 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 ZC3HAV1LQ96H79 300 aaKnown RBP12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 NODALQ96S42 347 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 TMEM204Q9BSN7 226 aa12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 ZNF717Q9BY31 904 aaPredicted RBP12.87□□□□□ -0.35
PRPF40A-211ENST00000493468 NXF5Q9H1B4 397 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms