RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SIRT5Q9NXA8 310 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 EHD3Q9NZN3 535 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 SENP1Q9P0U3 644 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 B4GALT7Q9UBV7 327 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 PRODH2Q9UF12 536 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 PLLPQ9Y342 182 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 KLF2Q9Y5W3 355 aaPredicted RBP13.89□□□□□ -0.19
USP39-217ENST00000491659 NPFFR2Q9Y5X5 522 aa13.89□□□□□ -0.19
USP39-217ENST00000491659 CHCHD2Q9Y6H1 151 aaPredicted RBP13.89□□□□□ -0.19
USP39-217ENST00000491659 MAST4O15021 2626 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 ATP6AP2A0A1C7CYW4 349 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 ATP6AP2O75787 350 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 LRATO95237 230 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 CHEK2O96017 543 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 AGAP20933 346 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 S1PR1P21453 382 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 FBXW4P57775 412 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 MRPS35P82673 323 aaKnown RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 MGAT2Q10469 447 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 FOXO1Q12778 655 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 LTB4RQ15722 352 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 NNATQ16517 81 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 CLEC6AQ6EIG7 209 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 TMEM64Q6YI46 380 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 C3P1Q6ZMU1 363 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 TRIM46Q7Z4K8 759 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 SLC34A3Q8N130 599 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 OR52R1Q8NGF1 315 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 FAM76AQ8TAV0 307 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 ZNF675Q8TD23 568 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 C11orf24Q96F05 449 aaPredicted RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 ZNF597Q96LX8 424 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 JSRP1Q96MG2 331 aaPredicted RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 FAM111AQ96PZ2 611 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 SMC6Q96SB8 1091 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 SECISBP2Q96T21 854 aaKnown RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 DOHHQ9BU89 302 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 GATA5Q9BWX5 397 aaPredicted RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 ITPAQ9BY32 194 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 LDAHQ9H6V9 325 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 EXO5Q9H790 373 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 ZFP64Q9NPA5 681 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 MIEF1Q9NQG6 463 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 SLC35C2Q9NQQ7 365 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 ZNF639Q9UID6 485 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 CNOT11Q9UKZ1 510 aaKnown RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 DTX4Q9Y2E6 619 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 FIS1Q9Y3D6 152 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 POLR3HQ9Y535 204 aaPredicted RBP13.88□□□□□ -0.19
USP39-217ENST00000491659 NCKAP5O14513 1909 aa13.88□□□□□ -0.19
USP39-217ENST00000491659 OR14I1A6ND48 311 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 SLC28A1O00337 649 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 AZIN1O14977 448 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 SPAG7O75391 227 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 BCAS2O75934 225 aaPredicted RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 CBX7O95931 251 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 IGHG3P01860 377 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 NEFHP12036 1026 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 PCSK2P16519 638 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 DDCP20711 480 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 ABCD3P28288 659 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 MAN2A2P49641 1150 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 DCAF7P61962 342 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 C2orf80Q0P641 193 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 SLC10A1Q14973 349 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 ERCC6LQ2NKX8 1250 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 TRMT12Q53H54 448 aaKnown RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 ZNF628Q5EBL2 1059 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 NCCRP1Q6ZVX7 275 aaPredicted RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 TRILQ7L0X0 811 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 HOMEZQ8IX15 550 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 CCDC116Q8IYX3 515 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 PRR22Q8IZ63 422 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 FAM9CQ8IZT9 166 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 MREGQ8N565 214 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 OR9A2Q8NGT5 310 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 SPPL2AQ8TCT8 520 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 CTHRC1Q96CG8 243 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 ERP27Q96DN0 273 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 HSPBAP1Q96EW2 488 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 METTL2AQ96IZ6 378 aaKnown RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 LCORQ96JN0 433 aaPredicted RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 BBS4Q96RK4 519 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 NXF5Q9H1B4 397 aaKnown RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 ZNF703Q9H7S9 590 aaPredicted RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 TNFRSF12AQ9NP84 129 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 MYNNQ9NPC7 610 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 WBP11Q9Y2W2 641 aaKnown RBP13.87□□□□□ -0.19
USP39-217ENST00000491659 LIPGQ9Y5X9 500 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 ZNF407Q9C0G0 2248 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 UNC79Q9P2D8 2635 aa13.87□□□□□ -0.19
USP39-217ENST00000491659 ANKRD33BA6NCL7 494 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 LRRC3CA6NJW4 275 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 NPIPA2E9PIF3 369 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 NPIPA3F8WFD2 350 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 AQP7O14520 342 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 BCKDKO14874 412 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 ACOX3O15254 700 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 RGS14O43566 566 aa13.86□□□□□ -0.19
USP39-217ENST00000491659 NPHS1O60500 1241 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms