RNA–Protein interactions for RNA: ENST00000489037.1

BRCA1-218, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 4

Gene BRCA1, Length 455 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-218ENST00000489037 EXPH5Q8NEV8 1989 aa13.18□□□□□ -0.3
BRCA1-218ENST00000489037 FREM3P0C091 2139 aa13.18□□□□□ -0.3
BRCA1-218ENST00000489037 TMEM114B3SHH9 223 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 G3V3Y1 287 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 PIP5K1BO14986 540 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 HS6ST1O60243 411 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 CDC40O60508 579 aaKnown RBP eCLIP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 ZNF354AO60765 605 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 SLC19A2O60779 497 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 SLITRK5O94991 958 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 SERPINE1P05121 402 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 PCSK2P16519 638 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 S1PR1P21453 382 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 GPX3P22352 226 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 ASMTP46597 345 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 NCBP2P52298 156 aaKnown RBP eCLIP13.17□□□□□ -0.35e-10■■■■■ 33.9
BRCA1-218ENST00000489037 PPIAP62937 165 aaKnown RBP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 RPL38P63173 70 aaKnown RBP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 KCNJ2P63252 427 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 MGAT2Q10469 447 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 KIAA0040Q15053 153 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 LTB4RQ15722 352 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 CHI3L2Q15782 390 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 NTRK2Q16620 822 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 TRMT12Q53H54 448 aaKnown RBP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 TBCELQ5QJ74 424 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 HHATQ5VTY9 493 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 C1QL3Q5VWW1 255 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 Q6ZSR9 355 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 FJX1Q86VR8 437 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 SIAH3Q8IW03 269 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 KIRREL3Q8IZU9 778 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 ZNF441Q8N8Z8 693 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 OR5M3Q8NGP4 307 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 OR9A2Q8NGT5 310 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 PAQR8Q8TEZ7 354 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 ADIPOR1Q96A54 375 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 CTHRC1Q96CG8 243 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 HSPBAP1Q96EW2 488 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 LCORQ96JN0 433 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 PKNOX2Q96KN3 472 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 TUBB1Q9H4B7 451 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 IL1RL2Q9HB29 575 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 ZNF639Q9UID6 485 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 BOKQ9UMX3 212 aaPredicted RBP13.17□□□□□ -0.3
BRCA1-218ENST00000489037 PTGDR2Q9Y5Y4 395 aa13.17□□□□□ -0.3
BRCA1-218ENST00000489037 RELNP78509 3460 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 TMEM233B4DJY2 109 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 CCL21O00585 134 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 PRRG2O14669 202 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 LSM1O15116 133 aaKnown RBP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ACOX3O15254 700 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 COQ9O75208 318 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 CBX7O95931 251 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 LDLRP01130 860 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 CCL3P10147 92 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ESRRAP11474 423 aaPredicted RBP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 NAGAP17050 411 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 GRK2P25098 689 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 PTGER1P34995 402 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ABCE1P61221 599 aaKnown RBP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 MRPS35P82673 323 aaKnown RBP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 DUSP2Q05923 314 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 RPS6KA2Q15349 733 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 CEBPEQ15744 281 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ATP6AP1LQ52LC2 224 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ZNF628Q5EBL2 1059 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 TNFAIP8L3Q5GJ75 292 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 RNFT1Q5M7Z0 435 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 BEND6Q5SZJ8 279 aaPredicted RBP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 LYPD8Q6UX82 237 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 SPPL2CQ8IUH8 684 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 EID3Q8N140 333 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 FBXW8Q8N3Y1 598 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 OR10G3Q8NGC4 313 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 OR2T11Q8NH01 316 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 DIO2Q92813 273 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 KAT2AQ92830 837 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 RELTQ969Z4 430 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ZBTB9Q96C00 473 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ITPAQ9BY32 194 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 TTTY12Q9BZ98 90 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 DEPPQ9NTK1 212 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 TAS2R9Q9NYW1 312 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 TAS2R7Q9NYW3 318 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 ZDHHC2Q9UIJ5 367 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 SH3BGRL2Q9UJC5 107 aa13.16□□□□□ -0.3
BRCA1-218ENST00000489037 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.16□□□□□ -0.3
BRCA1-218ENST00000489037 FAM166BA8MTA8 275 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 MYO1GB0I1T2 1018 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 SKAP2O75563 359 aaPredicted RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 JUNP05412 331 aaKnown RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 DRD5P21918 477 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 KRT20P35900 424 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 PIGAP37287 484 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 RPL3P39023 403 aaKnown RBP13.15□□□□□ -0.3
BRCA1-218ENST00000489037 CA7P43166 264 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 PPICP45877 212 aa13.15□□□□□ -0.3
BRCA1-218ENST00000489037 DNASE1L1P49184 302 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms