RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ASMTP46597 345 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 GPR85P60893 370 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 MRPL49Q13405 166 aaKnown RBP13.64□□□□□ -0.23
USP4-212ENST00000486549 ELOAQ14241 798 aaKnown RBP13.64□□□□□ -0.23
USP4-212ENST00000486549 CEBPEQ15744 281 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 NNATQ16517 81 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 ZNF385BQ569K4 471 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 IL23RQ5VWK5 629 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 TMEM64Q6YI46 380 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 KIRREL3Q8IZU9 778 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 CPSF7Q8N684 471 aaKnown RBP13.64□□□□□ -0.23
USP4-212ENST00000486549 PSD4Q8NDX1 1056 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 ZNF675Q8TD23 568 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 PPCDCQ96CD2 204 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 CTHRC1Q96CG8 243 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 ITPAQ9BY32 194 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 NUF2Q9BZD4 464 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 REEP4Q9H6H4 257 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 THAP1Q9NVV9 213 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 SH3BP4Q9P0V3 963 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 ZNF639Q9UID6 485 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 HAO1Q9UJM8 370 aa13.64□□□□□ -0.23
USP4-212ENST00000486549 KLF13Q9Y2Y9 288 aaPredicted RBP13.64□□□□□ -0.23
USP4-212ENST00000486549 HMGB1P1B2RPK0 211 aaPredicted RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 G3V3Y1 287 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 SNNO75324 88 aaPredicted RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 NME6O75414 186 aaPredicted RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 CRYABP02511 175 aaKnown RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 HPCAL1P37235 193 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 MEOX1P50221 254 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 PTGR1Q14914 329 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 TMEM107Q6UX40 140 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 RTL4Q6ZR62 310 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 PRR22Q8IZ63 422 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 TAGAPQ8N103 731 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 ZNF441Q8N8Z8 693 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 FAM13CQ8NE31 585 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 OR7G2Q8NG99 324 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 OR5M3Q8NGP4 307 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 RAB3IL1Q8TBN0 382 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 CIDECQ96AQ7 238 aaPredicted RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 SPACA9Q96E40 222 aaPredicted RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 MAGED4Q96JG8 741 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 BARD1Q99728 777 aaKnown RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 TSPAN10Q9H1Z9 355 aaPredicted RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 GLIPR2Q9H4G4 154 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 AKTIPQ9H8T0 292 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 TAS2R7Q9NYW3 318 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 EIF3LQ9Y262 564 aaKnown RBP13.63□□□□□ -0.23
USP4-212ENST00000486549 CFL2Q9Y281 166 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 EXPH5Q8NEV8 1989 aa13.63□□□□□ -0.23
USP4-212ENST00000486549 ANKUB1A6NFN9 424 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 KLRC4-KLRK1H3BQV0 150 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 SCAMP2O15127 329 aaKnown RBP13.62□□□□□ -0.23
USP4-212ENST00000486549 PEX1O43933 1283 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 PRPS2P11908 318 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 EFNA1P20827 205 aaPredicted RBP13.62□□□□□ -0.23
USP4-212ENST00000486549 MST1P26927 711 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 RFC3P40938 356 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 MC3RP41968 323 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 ALDH6A1Q02252 535 aaKnown RBP13.62□□□□□ -0.23
USP4-212ENST00000486549 HSPB3Q12988 150 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 MAD2L1Q13257 205 aaPredicted RBP13.62□□□□□ -0.23
USP4-212ENST00000486549 LYPD8Q6UX82 237 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 ZNF551Q7Z340 670 aaPredicted RBP13.62□□□□□ -0.23
USP4-212ENST00000486549 SULF2Q8IWU5 870 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 SLC15A4Q8N697 577 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 DNAJB8Q8NHS0 232 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 DYDC1Q8WWB3 177 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 NR4A3Q92570 626 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 ADIPOR1Q96A54 375 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 FRMD6Q96NE9 622 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 AMDHD1Q96NU7 426 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 SLX1AQ9BQ83 275 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 NXF5Q9H1B4 397 aaKnown RBP13.62□□□□□ -0.23
USP4-212ENST00000486549 DEPPQ9NTK1 212 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 PRODH2Q9UF12 536 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 FLNCQ14315 2725 aa13.62□□□□□ -0.23
USP4-212ENST00000486549 ESPL1Q14674 2120 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 UQCRHLA0A096LP55 91 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 A0A0G2JMM0 328 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 A0A1W2PPB8 328 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 A0A1W2PRS3 328 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 ASPDHA6ND91 283 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 KIR3DP1A8MWS1 328 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 BCAS2O75934 225 aaPredicted RBP13.61□□□□□ -0.23
USP4-212ENST00000486549 CBX6O95503 412 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 P04436 131 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 FBXO45P0C2W1 286 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 CCL3P10147 92 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 G6PDP11413 515 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 GP1BBP13224 206 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 EDN3P14138 238 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 GPC1P35052 558 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 EMDP50402 254 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 NRG3P56975 720 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 PPP2R2AP63151 447 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 OCRLQ01968 901 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 EMX2Q04743 252 aa13.61□□□□□ -0.23
USP4-212ENST00000486549 ZNF155Q12901 538 aaPredicted RBP13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms