RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 VCPP55072 806 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 WNT4P56705 351 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 RPS8P62241 208 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 NFE2L1Q14494 772 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 CD226Q15762 336 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 SBK1Q52WX2 424 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 ZNF658Q5TYW1 1059 aaPredicted RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 Q6P435 159 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 ZCCHC12Q6PEW1 402 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 SCARA5Q6ZMJ2 495 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 PIWIL3Q7Z3Z3 882 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 C14orf178Q8N769 122 aaPredicted RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 OR6M1Q8NGM8 313 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 GLYATL1Q969I3 302 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 PLEKHF1Q96S99 279 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 FAM173AQ9BQD7 235 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 UTP14AQ9BVJ6 771 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 GPR174Q9BXC1 333 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 TRIM9Q9C026 710 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 ZNF350Q9GZX5 532 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 NRN1Q9NPD7 142 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 DDX28Q9NUL7 540 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 APOBEC3BQ9UH17 382 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 CIDEBQ9UHD4 219 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 KCNK6Q9Y257 313 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 ZFP37Q9Y6Q3 630 aaPredicted RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 GTF3C1Q12789 2109 aa2.03□□□□□ -2.08
VPS50-216ENST00000484954 ZNFX1Q9P2E3 1918 aaKnown RBP2.03□□□□□ -2.08
VPS50-216ENST00000484954 A0A0U1RQK1 487 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 A4D1N5 150 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 FAM149AA5PLN7 773 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 PINLYPA6NC86 204 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 SLC17A2O00624 439 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 SH2D1BO14796 132 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 PSMD3O43242 534 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 TBCAO75347 108 aaKnown RBP2.02□□□□□ -2.09
VPS50-216ENST00000484954 IGLV1-47P01700 117 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 IGFBP5P24593 272 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ALDH3B2P48448 385 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 POU3F4P49335 361 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 DIO3P55073 304 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ST8SIA6P61647 398 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 RBP5P82980 135 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 GK2Q14410 553 aaPredicted RBP2.02□□□□□ -2.09
VPS50-216ENST00000484954 RPS6KA1Q15418 735 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 STX1AQ16623 288 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 MEP1BQ16820 701 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ANKRD20A4Q4UJ75 823 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ZNF658BQ4V348 819 aaPredicted RBP2.02□□□□□ -2.09
VPS50-216ENST00000484954 MPPE1Q53F39 396 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ANKRD20A8PQ5CZ79 823 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ANKRD20A2Q5SQ80 823 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ANKRD20A1Q5TYW2 823 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ANKRD20A3Q5VUR7 823 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 TMED8Q6PL24 325 aaPredicted RBP2.02□□□□□ -2.09
VPS50-216ENST00000484954 MFSD7Q6UXD7 560 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 STOX1Q6ZVD7 989 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ENTHD1Q8IYW4 607 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 RFESDQ8TAC1 157 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 SETD7Q8WTS6 366 aaKnown RBP2.02□□□□□ -2.09
VPS50-216ENST00000484954 TEKT1Q969V4 418 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ELSPBP1Q96BH3 223 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 SLC25A38Q96DW6 304 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 C9orf85Q96MD7 179 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 ZMAT2Q96NC0 199 aaKnown RBP2.02□□□□□ -2.09
VPS50-216ENST00000484954 C19orf43Q9BQ61 176 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 EBF4Q9BQW3 602 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 FUNDC2Q9BWH2 189 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 DCTPP1Q9H773 170 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 CENPMQ9NSP4 180 aa2.02□□□□□ -2.09
VPS50-216ENST00000484954 RSPH10B2B2RC85 870 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 EMC8O43402 210 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 RANBP6O60518 1105 aaKnown RBP2.01□□□□□ -2.09
VPS50-216ENST00000484954 CRCPO75575 148 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 IGHV3-23P01764 117 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 ASNSP08243 561 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 RSPH10BP0C881 870 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 ZNF853P0CG23 659 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 CCDC166P0CW27 439 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 CYP3A5P20815 502 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 ACP1P24666 158 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 MAT2AP31153 395 aaKnown RBP2.01□□□□□ -2.09
VPS50-216ENST00000484954 OR3A4PP47883 348 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 MECOMQ03112 1051 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 OVGP1Q12889 678 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 TRADDQ15628 312 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 SGCBQ16585 318 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 HKDC1Q2TB90 917 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 DCAF4L1Q3SXM0 396 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 OTPQ5XKR4 325 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 KCTD11Q693B1 232 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 RTL6Q6ICC9 239 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 STHQ8IWL8 128 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 SPAG8Q99932 426 aaPredicted RBP2.01□□□□□ -2.09
VPS50-216ENST00000484954 DDX50Q9BQ39 737 aaKnown RBP2.01□□□□□ -2.09
VPS50-216ENST00000484954 C19orf24Q9BVV8 132 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 TUBGCP4Q9UGJ1 667 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 TEKT2Q9UIF3 430 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 CCPG1Q9ULG6 757 aa2.01□□□□□ -2.09
VPS50-216ENST00000484954 CYB561D2O14569 222 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms