RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 CEBPBP17676 345 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 CALB2P22676 271 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 PAX9P55771 341 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 CNTN2Q02246 1040 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 SRYQ05066 204 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 RBBP4Q09028 425 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 ARL16Q0P5N6 197 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 DDX39BQ13838 428 aaKnown RBP3.87□□□□□ -1.79
VPS13A-211ENST00000484581 GCKRQ14397 625 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 PDK3Q15120 406 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 CDKN3Q16667 212 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 LINC01620Q4KN68 170 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 RABGAP1LQ5R372 815 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 DMKNQ6E0U4 476 aaPredicted RBP3.87□□□□□ -1.79
VPS13A-211ENST00000484581 RHBDD2Q6NTF9 364 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 NEPROQ6NW34 567 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 FIP1L1Q6UN15 594 aaKnown RBP3.87□□□□□ -1.79
VPS13A-211ENST00000484581 CHMP1BQ7LBR1 199 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 SMIM29Q86T20 159 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 RAB42Q8N4Z0 105 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 ICA1LQ8NDH6 482 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 OR10V1Q8NGI7 309 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 RAET1EQ8TD07 263 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 SECISBP2Q96T21 854 aaKnown RBP3.87□□□□□ -1.79
VPS13A-211ENST00000484581 GSDMCQ9BYG8 508 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 MMP28Q9H239 520 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 DCTPP1Q9H773 170 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 NMUR1Q9HB89 426 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 POLD4Q9HCU8 107 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 NMRK1Q9NWW6 199 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 C2orf42Q9NWW7 574 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 KLK11Q9UBX7 282 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 LNPEPQ9UIQ6 1025 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 C2CD2Q9Y426 696 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 OR10H1Q9Y4A9 318 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 MYH15Q9Y2K3 1946 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 PTCH1Q13635 1447 aa3.87□□□□□ -1.79
VPS13A-211ENST00000484581 LOC105371242A0A075B767 164 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 TTC26A0AVF1 554 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 NPIPA2E9PIF3 369 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ZNF195O14628 629 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 CTAGE5O15320 804 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 TNFSF12O43508 249 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 BCAS1O75363 584 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 SURF6O75683 361 aaKnown RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 KRT36O76013 467 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 MT-ND1P03886 318 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 SLC35G4P0C7Q5 338 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 UQCRBP14927 111 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 PSMA2P25787 234 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 CYLC1P35663 651 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 HTR5AP47898 357 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 PPT1P50897 306 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 NUCB2P80303 420 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 MRPS6P82932 125 aaKnown RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ITPK1Q13572 414 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 SELPLGQ14242 412 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 SLC17A1Q14916 467 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ZRSR1Q15695 479 aaKnown RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 SGSM1Q2NKQ1 1148 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 TTC23Q5W5X9 447 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 KRTAP5-4Q6L8H1 288 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 LEG1Q6P5S2 330 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ZNF562Q6V9R5 426 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ZYG11AQ6WRX3 759 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 NET1Q7Z628 596 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 RPAINQ86UA6 219 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 HOGA1Q86XE5 327 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 APLFQ8IW19 511 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 DCLK2Q8N568 766 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 PNPT1Q8TCS8 783 aaKnown RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ZNF524Q96C55 264 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 ZNF486Q96H40 463 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 CPXM1Q96SM3 734 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 VCX2Q9H322 139 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 TM9SF3Q9HD45 589 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 GPR83Q9NYM4 423 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 KLHL8Q9P2G9 620 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 RNF14Q9UBS8 474 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 PURGQ9UJV8 347 aaKnown RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 RNF6Q9Y252 685 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 KLF2Q9Y5W3 355 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-211ENST00000484581 FKBP7Q9Y680 259 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 AFF2P51816 1311 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 CARMIL1Q5VZK9 1371 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 CCDC7Q96M83 1385 aa3.86□□□□□ -1.79
VPS13A-211ENST00000484581 A0A087WW49 117 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 PPIAL4CA0A0B4J2A2 164 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 GSAPA4D1B5 854 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 TMCO5BA8MYB1 307 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 ERVV-2B6SEH9 535 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 BLOC1S5-TXNDC5H3BN57 136 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 INPP4BO15327 924 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 DCXO43602 365 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 PCDH7O60245 1069 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 NXPH2O95156 264 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 PRSS56P0CW18 603 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 PPIAL4GP0DN37 164 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 TSPAN8P19075 237 aa3.85□□□□□ -1.79
VPS13A-211ENST00000484581 KRTAP5-9P26371 169 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms