RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C17orf105B2RV13 164 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 POC1B-GALNT4F8VUJ3 575 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 STX16-NPEPL1H3BU86 382 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 FOXE1O00358 373 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PLPP1O14494 284 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 STX16O14662 325 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 TFECO14948 347 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ASNA1O43681 348 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PRKNO60260 465 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SMIM24O75264 130 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 OR2J2O76002 312 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 KRT38O76015 456 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SIX3O95343 332 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 COL6A2P12110 1019 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PTX3P26022 381 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ECHS1P30084 290 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 TLX1P31314 330 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 MAGEA12P43365 314 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 MEOX1P50221 254 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 RPS13P62277 151 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PLIN5Q00G26 463 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 TNFRSF17Q02223 184 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ID2Q02363 134 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 BIKQ13323 160 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 CUL3Q13618 768 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 Q6ZPB1 254 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 GPR180Q86V85 440 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF227Q86WZ6 799 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SIAH3Q8IW03 269 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC34A3Q8N130 599 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 GHDCQ8N2G8 530 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ZCCHC7Q8N3Z6 543 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 CPSF7Q8N684 471 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 L3MBTL4Q8NA19 623 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 OR5L2Q8NGL0 311 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 OR8K3Q8NH51 312 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 KIF18AQ8NI77 898 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC2A12Q8TD20 617 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 DCAKDQ8WVC6 231 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ASB15Q8WXK1 588 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 TANKQ92844 425 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 KISS1RQ969F8 398 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ATP6V1E2Q96A05 226 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ANKRD9Q96BM1 317 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PHF21BQ96EK2 531 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SCYL1Q96KG9 808 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 DGAT2Q96PD7 388 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 OR8D2Q9GZM6 311 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 RPF2Q9H7B2 306 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 NOL11Q9H8H0 719 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 IPPKQ9H8X2 491 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 HPF1Q9NWY4 346 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 LYARQ9NX58 379 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PSD3Q9NYI0 1048 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 MYOTQ9UBF9 498 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 COPS7AQ9UBW8 275 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 SH3BGRL2Q9UJC5 107 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ING1Q9UK53 422 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ERVK-11Q9UQG0 969 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF835Q9Y2P0 537 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 PHF3Q92576 2039 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 CELSR2Q9HCU4 2923 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 EXPH5Q8NEV8 1989 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 NINQ8N4C6 2090 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 A0A0A6YYD5 115 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 EXOC1LA0A1B0GW35 172 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 TMEM200CA6NKL6 621 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 TRIM49D1C9J1S8 452 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PRSS44E7EML9 344 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 WWP2O00308 870 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 OR7A17O14581 309 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PROM1O43490 865 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 PEX1O43933 1283 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 FGF17O60258 216 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 WISP2O76076 250 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 CLDN9O95484 217 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 FAM58BPP0C7Q3 252 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 NR2F6P10588 404 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ALOX15P16050 662 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ABOP16442 354 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 STT3AP46977 705 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 CCNG1P51959 295 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 HNRNPH2P55795 449 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 IGLV3-21P80748 117 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 FOLH1Q04609 750 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 IFT88Q13099 833 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 ART3Q13508 389 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 C3AR1Q16581 482 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 C10orf62Q5T681 223 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 LGSNQ5TDP6 509 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 C18orf63Q68DL7 685 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 TTC19Q6DKK2 380 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 CYP20A1Q6UW02 462 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 IL20RBQ6UXL0 311 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 MDGA2Q7Z553 956 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 MRGPRGQ86SM5 289 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 NUDT13Q86X67 352 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 IFT20Q8IY31 132 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 EID3Q8N140 333 aa6.29□□□□□ -1.4
CCDC88A-213ENST00000476903 RNF175Q8N4F7 328 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms