RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	TMED10	P49755	219 aa	Known RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	FBXW4	P57775	412 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	RPL38	P63173	70 aa	Known RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	FUT7	Q11130	342 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	PRICKLE4	Q2TBC4	344 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	ZNF791	Q3KP31	576 aa	Predicted RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	TRMT12	Q53H54	448 aa	Known RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	NOXRED1	Q6NXP6	359 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	PAOX	Q6QHF9	649 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	MAMDC2	Q7Z304	686 aa	Predicted RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	TICAM1	Q8IUC6	712 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	NUDCD3	Q8IVD9	361 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	SAMD14	Q8IZD0	417 aa	Predicted RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	ZNF615	Q8N8J6	731 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	ZFP62	Q8NB50	900 aa	Predicted RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	PKNOX2	Q96KN3	472 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	LRTM1	Q9HBL6	345 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	SLC35C2	Q9NQQ7	365 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	C1orf109	Q9NX04	203 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	BOK	Q9UMX3	212 aa	Predicted RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	NPFFR2	Q9Y5X5	522 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	CACNA1C	Q13936	2221 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	CENPE	Q02224	2701 aa		13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	NCOA6	Q14686	2063 aa	Predicted RBP	13.65	□□□□□ -0.22
SSR4-208	ENST00000471880	NIN	Q8N4C6	2090 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	SERTM1	A2A2V5	107 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	AKAP10	O43572	662 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	NPHS1	O60500	1241 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	SKAP2	O75563	359 aa	Predicted RBP	13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	JUN	P05412	331 aa	Known RBP	13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	TUBB	P07437	444 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	FBXO45	P0C2W1	286 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	GPX3	P22352	226 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	NTS	P30990	170 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	MPI	P34949	423 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	MAGEA5	P43359	124 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	MASP1	P48740	699 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	NCBP2	P52298	156 aa	Known RBP eCLIP	13.64	□□□□□ -0.23	7e-8	■□□□□ 8.7
SSR4-208	ENST00000471880	PLCXD2	Q0VAA5	305 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	MAP4K2	Q12851	820 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	RPS6KA2	Q15349	733 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	TOMM20	Q15388	145 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	CMPK2	Q5EBM0	449 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	ARL13A	Q5H913	290 aa	Predicted RBP	13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	MTFR2	Q6P444	385 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	GALNT18	Q6P9A2	607 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	TRIM46	Q7Z4K8	759 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	CD163	Q86VB7	1156 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	FAM9C	Q8IZT9	166 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	SIMC1	Q8NDZ2	872 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	CLHC1	Q8NHS4	586 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	TWIST2	Q8WVJ9	160 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	CCDC120	Q96HB5	630 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	ZIM3	Q96PE6	472 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	PAIP2	Q9BPZ3	127 aa	Known RBP	13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	DOHH	Q9BU89	302 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	TMEM109	Q9BVC6	243 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	NXF5	Q9H1B4	397 aa	Known RBP	13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	ANKRA2	Q9H9E1	313 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	IL1RL2	Q9HB29	575 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	EHD3	Q9NZN3	535 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	CNIH4	Q9P003	139 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	PRODH2	Q9UF12	536 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	RAB21	Q9UL25	225 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	DTX4	Q9Y2E6	619 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	TRAF6	Q9Y4K3	522 aa		13.64	□□□□□ -0.23
SSR4-208	ENST00000471880	WIPF3	A6NGB9	483 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	PIP5K1B	O14986	540 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	NME6	O75414	186 aa	Predicted RBP	13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	ERLIN1	O75477	346 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	HSPA4L	O95757	839 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	CLDN1	O95832	211 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	BPGM	P07738	259 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	DDC	P20711	480 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	KRT20	P35900	424 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	GSTM5	P46439	218 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	RPP38	P78345	283 aa	Known RBP	13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	ZNF155	Q12901	538 aa	Predicted RBP	13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	KANK2	Q63ZY3	851 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	ANKRD26P1	Q6NSI1	321 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	ARHGAP11A	Q6P4F7	1023 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	LYPD8	Q6UX82	237 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	SZRD1	Q7Z422	152 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	DND1	Q8IYX4	353 aa	Known RBP	13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	CLYBL	Q8N0X4	340 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	FBXW8	Q8N3Y1	598 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	TMEM251	Q8N6I4	163 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	PAQR8	Q8TEZ7	354 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	RELT	Q969Z4	430 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	TP53INP1	Q96A56	240 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	ZNF681	Q96N22	645 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	TSSK3	Q96PN8	268 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	METTL7A	Q9H8H3	244 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	MYNN	Q9NPC7	610 aa		13.63	□□□□□ -0.23
SSR4-208	ENST00000471880	NBPF19	A0A087WUL8	3843 aa		13.62	□□□□□ -0.23
SSR4-208	ENST00000471880	NPIPA2	E9PIF3	369 aa		13.62	□□□□□ -0.23
SSR4-208	ENST00000471880	NPIPA3	F8WFD2	350 aa		13.62	□□□□□ -0.23
SSR4-208	ENST00000471880	CBX7	O95931	251 aa		13.62	□□□□□ -0.23
SSR4-208	ENST00000471880	S1PR1	P21453	382 aa		13.62	□□□□□ -0.23

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