RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 ATP1B1P05026 303 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 RPS17P08708 135 aaKnown RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 S1PR1P21453 382 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 GPX3P22352 226 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 CEACAM8P31997 349 aaPredicted RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 TIMP3P35625 211 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 DEKP35659 375 aaKnown RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 KIR2DL3P43628 341 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 ASCL1P50553 236 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 MAP4K2Q12851 820 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 SGO1Q5FBB7 561 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 NHSL2Q5HYW2 709 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 VASNQ6EMK4 673 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 ZZZ3Q8IYH5 903 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 RELL2Q8NC24 303 aaPredicted RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 HSPBAP1Q96EW2 488 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 TMEM41AQ96HV5 264 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 GNRHR2Q96P88 292 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 NXF5Q9H1B4 397 aaKnown RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 MRPL46Q9H2W6 279 aaKnown RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 BRF2Q9HAW0 419 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 NMRK1Q9NWW6 199 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 ZNF629Q9UEG4 869 aaPredicted RBP16■□□□□ 0.15
COL7A1-208ENST00000470076 ZNF180Q9UJW8 692 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 PSME2Q9UL46 239 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 SNX6Q9UNH7 406 aa16■□□□□ 0.15
COL7A1-208ENST00000470076 HRNRQ86YZ3 2850 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 PPM1BO75688 479 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 IL2RAP01589 272 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 ABCB1P08183 1280 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 CSNK2A2P19784 350 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 BMP5P22003 454 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 UQCRC1P31930 480 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 GALNT1Q10472 559 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 PRICKLE4Q2TBC4 344 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 FBXL19-AS1Q494R0 122 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 TIGD3Q6B0B8 471 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 TMEM81Q6P7N7 255 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 PRR22Q8IZ63 422 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 NAXEQ8NCW5 288 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 TNIP2Q8NFZ5 429 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 ZNF483Q8TF39 744 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 SELENOMQ8WWX9 145 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 NTNG2Q96CW9 530 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 FMO2Q99518 471 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 C1QTNF3Q9BXJ4 246 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 POLDIP3Q9BY77 421 aaKnown RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 BRINP2Q9C0B6 783 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 FARSBQ9NSD9 589 aaKnown RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 MAT2BQ9NZL9 334 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 FOXD3Q9UJU5 478 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-208ENST00000470076 DTX4Q9Y2E6 619 aa15.99■□□□□ 0.15
COL7A1-208ENST00000470076 ACOX3O15254 700 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 ERAL1O75616 437 aaKnown RBP15.98■□□□□ 0.15
COL7A1-208ENST00000470076 PDYNP01213 254 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 FEN1P39748 380 aaKnown RBP15.98■□□□□ 0.15
COL7A1-208ENST00000470076 MGAT2Q10469 447 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 TOMM20Q15388 145 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 WHAMMP3Q1A5X7 153 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 NSUN5P2Q63ZY6 315 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 LETMD1Q6P1Q0 360 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 FAM111BQ6SJ93 734 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 NUP54Q7Z3B4 507 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 OR1J4Q8NGS1 313 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 NRGNQ92686 78 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 NINJ1Q92982 152 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 RNASE6Q93091 150 aaKnown RBP15.98■□□□□ 0.15
COL7A1-208ENST00000470076 TM4SF18Q96CE8 201 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 LCORQ96JN0 433 aaPredicted RBP15.98■□□□□ 0.15
COL7A1-208ENST00000470076 SH3GL2Q99962 352 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 METTL7AQ9H8H3 244 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 FETUBQ9UGM5 382 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 TRPS1Q9UHF7 1281 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 BCAP29Q9UHQ4 241 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 DMGDHQ9UI17 866 aaKnown RBP15.98■□□□□ 0.15
COL7A1-208ENST00000470076 ZNF639Q9UID6 485 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 CAMK2AQ9UQM7 478 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 SLC6A5Q9Y345 797 aa15.98■□□□□ 0.15
COL7A1-208ENST00000470076 ABCA4P78363 2273 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 DOCK7Q96N67 2140 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 A0A1B0GTL3 188 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 CD8B2A6NJW9 211 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 A8MT66 165 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 TRIM49D1C9J1S8 452 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 POC1B-GALNT4F8VUJ3 575 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 GNB5O14775 395 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 URI1O94763 535 aaPredicted RBP15.97■□□□□ 0.15
COL7A1-208ENST00000470076 BMP7P18075 431 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 PTPN6P29350 595 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 IST1P53990 364 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 CDH13P55290 713 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 DCAF7P61962 342 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 TRA2BP62995 288 aaKnown RBP15.97■□□□□ 0.15
COL7A1-208ENST00000470076 SNTA1Q13424 505 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 NNATQ16517 81 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 FLYWCH1Q4VC44 716 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 SLC30A6Q6NXT4 461 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 POMZP3Q6PJE2 187 aa15.97■□□□□ 0.15
COL7A1-208ENST00000470076 RPS27LQ71UM5 84 aaKnown RBP15.97■□□□□ 0.15
COL7A1-208ENST00000470076 MMGT1Q8N4V1 131 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms