RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 LIME1Q9H400 295 aa12.15□□□□□ -0.46
CPSF4-210ENST00000469897 TMCO1Q9UM00 188 aa12.15□□□□□ -0.46
CPSF4-210ENST00000469897 C15orf41Q9Y2V0 281 aa12.15□□□□□ -0.46
CPSF4-210ENST00000469897 AKAP9Q99996 3911 aa12.15□□□□□ -0.46
CPSF4-210ENST00000469897 POLQO75417 2590 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 ADGRG4Q8IZF6 3080 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 TRIM49D1C9J1S8 452 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 BMP7P18075 431 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 KRT15P19012 456 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 CSNK2A2P19784 350 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 GPX3P22352 226 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 CEACAM8P31997 349 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 SOX18P35713 384 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 TMED10P49755 219 aaKnown RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 SERPINB9P50453 376 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 RPP38P78345 283 aaKnown RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 DUSP2Q05923 314 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 TRMT12Q53H54 448 aaKnown RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 C10orf62Q5T681 223 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 TIGD3Q6B0B8 471 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 LETMD1Q6P1Q0 360 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 POMZP3Q6PJE2 187 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 NUP54Q7Z3B4 507 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 YRDCQ86U90 279 aaKnown RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 VWA5B2Q8N398 1253 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 MMGT1Q8N4V1 131 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 RELL2Q8NC24 303 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 OR1J4Q8NGS1 313 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 ZNF483Q8TF39 744 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 DCAKDQ8WVC6 231 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 NTNG2Q96CW9 530 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 WDYHV1Q96HA8 205 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 TRIB1Q96RU8 372 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 NODALQ96S42 347 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 HBEGFQ99075 208 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 POLDIP3Q9BY77 421 aaKnown RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 MRPL46Q9H2W6 279 aaKnown RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 UBQLN3Q9H347 655 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 MAT2BQ9NZL9 334 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 CRIM1Q9NZV1 1036 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 ZNF629Q9UEG4 869 aaPredicted RBP12.14□□□□□ -0.47
CPSF4-210ENST00000469897 ZNF639Q9UID6 485 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 ZNF225Q9UK10 706 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 PSME2Q9UL46 239 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 SNX6Q9UNH7 406 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 CAMK2AQ9UQM7 478 aa12.14□□□□□ -0.47
CPSF4-210ENST00000469897 PKDREJQ9NTG1 2253 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 GOLGA6L10A6NI86 522 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 A8MT66 165 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 DVL2O14641 736 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 ICOSLGO75144 302 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 PPM1BO75688 479 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 OR4F21O95013 312 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 OTCP00480 354 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 IL2RAP01589 272 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 ATP1B1P05026 303 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 RPS17P08708 135 aaKnown RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 CD1EP15812 388 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 NAGAP17050 411 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 PTPN6P29350 595 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 TIMP3P35625 211 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 HSD17B3P37058 310 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 ALDH9A1P49189 494 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 NAGLUP54802 743 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 LTB4RQ15722 352 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 GGTA1PQ4G0N0 100 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 ANGPTL8Q6UXH0 198 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 LACC1Q8IV20 430 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 PM20D2Q8IYS1 436 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 CCDC116Q8IYX3 515 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 C1orf52Q8N6N3 182 aaKnown RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 NOA1Q8NC60 698 aaKnown RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 C17orf47Q8NEP4 570 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 RNASE6Q93091 150 aaKnown RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 HGDQ93099 445 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 ABTB1Q969K4 478 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 TMEM41AQ96HV5 264 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 LCORQ96JN0 433 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 GPATCH1Q9BRR8 931 aaKnown RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 ITPAQ9BY32 194 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 UGT2B28Q9BY64 529 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 PRDM14Q9GZV8 571 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 TSPYL1Q9H0U9 437 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 METTL7AQ9H8H3 244 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 CCM2LQ9NUG4 571 aaPredicted RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 NMRK1Q9NWW6 199 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 EHD3Q9NZN3 535 aa12.13□□□□□ -0.47
CPSF4-210ENST00000469897 TEP1Q99973 2627 aaKnown RBP12.13□□□□□ -0.47
CPSF4-210ENST00000469897 PCNX1Q96RV3 2341 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 CBX7O95931 251 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 SNRPAP09012 282 aaKnown RBP12.12□□□□□ -0.47
CPSF4-210ENST00000469897 CHN1P15882 459 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 DRD5P21918 477 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 PTGDSP41222 190 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 ZNF136P52737 540 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 CLCQ05315 142 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 SF3B4Q15427 424 aaKnown RBP eCLIP12.12□□□□□ -0.479e-7■■□□□ 11.9
CPSF4-210ENST00000469897 WHAMMP3Q1A5X7 153 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 UNC50Q53HI1 259 aa12.12□□□□□ -0.47
CPSF4-210ENST00000469897 NHSL2Q5HYW2 709 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms