RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DMRTA2Q96SC8 542 aa11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 FAIM2Q9BWQ8 316 aa11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 ADAP2Q9NPF8 381 aa11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 PNPOQ9NVS9 261 aa11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 TMED5Q9Y3A6 229 aa11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 POLR3HQ9Y535 204 aaPredicted RBP11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 PCDHA9Q9Y5H5 950 aa11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 FN1P02751 2386 aaKnown RBP11.05□□□□□ -0.64
SQSTM1-206ENST00000466342 ATP6AP2A0A1C7CYW4 349 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 SAGE2PA6NJ88 616 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 GLOD5A6NK44 160 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 PGRMC2O15173 223 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 ATP6AP2O75787 350 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 C8BP07358 591 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 HOXD4P09016 255 aaPredicted RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 RPL38P63173 70 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 ID2Q02363 134 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 BIKQ13323 160 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 TERF2Q15554 542 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 ELAVL1Q15717 326 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 GALNTL6Q49A17 601 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 RFTN2Q52LD8 501 aaPredicted RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 SLC48A1Q6P1K1 146 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 DOLPP1Q86YN1 238 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 CRLF3Q8IUI8 442 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 EID3Q8N140 333 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 ARFGAP2Q8N6H7 521 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 ELP5Q8TE02 316 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 C16orf78Q8WTQ4 265 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 NUDT8Q8WV74 236 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 UCN3Q969E3 161 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 TUBGCP3Q96CW5 907 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 C18orf12Q96KH6 178 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 UTP23Q9BRU9 249 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 ALOXE3Q9BYJ1 711 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 LIME1Q9H400 295 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 SLC24A3Q9HC58 644 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 MYNNQ9NPC7 610 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 NPDC1Q9NQX5 325 aaPredicted RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 PNO1Q9NRX1 252 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 DNAJB12Q9NXW2 375 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 VTI1BQ9UEU0 232 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 DLGAP4Q9Y2H0 992 aa11.04□□□□□ -0.64
SQSTM1-206ENST00000466342 PHF3Q92576 2039 aaKnown RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 WASHC1A8K0Z3 465 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 A8MUA0 341 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 SLCO1B7G3V0H7 640 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 ADAM10O14672 748 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 GPR75O95800 540 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 IFNA16P05015 189 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 IL3P08700 152 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 ABOP16442 354 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 SDC1P18827 310 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 DNASE1P24855 282 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 PIK3R1P27986 724 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 ADSLP30566 484 aaPredicted RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 CD96P40200 585 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 ALDH9A1P49189 494 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 HK2P52789 917 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 PLIN5Q00G26 463 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 TFF3Q07654 80 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 TUBA3CQ13748 450 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 HEPACAMQ14CZ8 416 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 ATP6AP1LQ52LC2 224 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 ZNF766Q5HY98 468 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 C6orf136Q5SQH8 315 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 FCRLBQ6BAA4 426 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 TUBA3EQ6PEY2 450 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 CLEC9AQ6UXN8 241 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 IKBIPQ70UQ0 350 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 RPS19BP1Q86WX3 136 aaKnown RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 OR4N5Q8IXE1 308 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 BEST3Q8N1M1 668 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 TMEM132CQ8N3T6 1108 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 HORMAD2Q8N7B1 307 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 PIWIL2Q8TC59 973 aaKnown RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 CKAP2Q8WWK9 683 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 MAGEB18Q96M61 343 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 C7orf26Q96N11 449 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 PELOQ9BRX2 385 aaKnown RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 NUF2Q9BZD4 464 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 MEAF6Q9HAF1 191 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 HEY2Q9UBP5 337 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 MARCOQ9UEW3 520 aaPredicted RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 GIMAP2Q9UG22 337 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 CES1P1Q9UKY3 287 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 EDARQ9UNE0 448 aa11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 WBP11Q9Y2W2 641 aaKnown RBP11.03□□□□□ -0.64
SQSTM1-206ENST00000466342 MYOCOSA0A1B0GUC4 107 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 HDAC3O15379 428 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 PEX11AO75192 247 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 HEXAP06865 529 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 INHBBP09529 407 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 KITP10721 976 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 COX7A2P14406 83 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 CD46P15529 392 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 ALOX15P16050 662 aaPredicted RBP11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 TACR1P25103 407 aa11.02□□□□□ -0.65
SQSTM1-206ENST00000466342 MSX1P28360 303 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms