RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 NPIPA3F8WFD2 350 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 C19orf84I3L1E1 186 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 PCSK2P16519 638 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 AGAP20933 346 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 KCNJ2P63252 427 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 PRSS53Q2L4Q9 553 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 SPIN4Q56A73 249 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 C6orf163Q5TEZ5 329 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 HLA-DQA1Q5Y7H0 255 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 DESI1Q6ICB0 168 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 GALNT18Q6P9A2 607 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 DND1Q8IYX4 353 aaKnown RBP20.01■□□□□ 0.79
LIME1-203ENST00000465591 SLC34A3Q8N130 599 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 LRRC25Q8N386 305 aaPredicted RBP20.01■□□□□ 0.79
LIME1-203ENST00000465591 CCDC63Q8NA47 563 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 RDH11Q8TC12 318 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 MARVELD3Q96A59 401 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 ITPAQ9BY32 194 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 ZNF703Q9H7S9 590 aaPredicted RBP20.01■□□□□ 0.79
LIME1-203ENST00000465591 ANKRA2Q9H9E1 313 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 CNIH4Q9P003 139 aa20.01■□□□□ 0.79
LIME1-203ENST00000465591 MED12Q93074 2177 aa20■□□□□ 0.79
LIME1-203ENST00000465591 A0A1B0GVC2 190 aa20■□□□□ 0.79
LIME1-203ENST00000465591 NME6O75414 186 aaPredicted RBP20■□□□□ 0.79
LIME1-203ENST00000465591 ENDOUP21128 410 aaKnown RBP20■□□□□ 0.79
LIME1-203ENST00000465591 PCLAFQ15004 111 aa20■□□□□ 0.79
LIME1-203ENST00000465591 RPS6KA2Q15349 733 aa20■□□□□ 0.79
LIME1-203ENST00000465591 PAOXQ6QHF9 649 aa20■□□□□ 0.79
LIME1-203ENST00000465591 C10orf107Q8IVU9 208 aa20■□□□□ 0.79
LIME1-203ENST00000465591 CCDC116Q8IYX3 515 aa20■□□□□ 0.79
LIME1-203ENST00000465591 OR5M9Q8NGP3 310 aa20■□□□□ 0.79
LIME1-203ENST00000465591 EXOSC8Q96B26 276 aaKnown RBP20■□□□□ 0.79
LIME1-203ENST00000465591 SMC6Q96SB8 1091 aa20■□□□□ 0.79
LIME1-203ENST00000465591 ZFP64Q9NPA5 681 aa20■□□□□ 0.79
LIME1-203ENST00000465591 PNPLA3Q9NST1 481 aa20■□□□□ 0.79
LIME1-203ENST00000465591 SIRT5Q9NXA8 310 aa20■□□□□ 0.79
LIME1-203ENST00000465591 BCAP29Q9UHQ4 241 aa20■□□□□ 0.79
LIME1-203ENST00000465591 PSME2Q9UL46 239 aa20■□□□□ 0.79
LIME1-203ENST00000465591 PLLPQ9Y342 182 aa20■□□□□ 0.79
LIME1-203ENST00000465591 PTGDR2Q9Y5Y4 395 aa20■□□□□ 0.79
LIME1-203ENST00000465591 ZNF780BQ9Y6R6 833 aa20■□□□□ 0.79
LIME1-203ENST00000465591 HNRNPRO43390 633 aaKnown RBP19.99■□□□□ 0.79
LIME1-203ENST00000465591 CLDN14O95500 239 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 NUDT17P0C025 328 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 DRD2P14416 443 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 ABCD3P28288 659 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 SLC10A1Q14973 349 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 GXYLT1Q4G148 440 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 ZNF628Q5EBL2 1059 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 CFAP157Q5JU67 520 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 SPDYAQ5MJ70 313 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 C17orf47Q8NEP4 570 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 OR52R1Q8NGF1 315 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 SPPL2AQ8TCT8 520 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 AENQ8WTP8 325 aaKnown RBP19.99■□□□□ 0.79
LIME1-203ENST00000465591 DIO2Q92813 273 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 DOHHQ9BU89 302 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 SPRR3Q9UBC9 169 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.99■□□□□ 0.79
LIME1-203ENST00000465591 CCL27Q9Y4X3 112 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 V9GYY5 206 aaPredicted RBP19.99■□□□□ 0.79
LIME1-203ENST00000465591 CREBBPQ92793 2442 aa19.99■□□□□ 0.79
LIME1-203ENST00000465591 CCDC151A5D8V7 595 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 TRIM3O75382 744 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 ANXA4P09525 319 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 EMDP50402 254 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 FNDC7Q5VTL7 733 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 LIPMQ5VYY2 423 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 CLEC6AQ6EIG7 209 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 TRIM46Q7Z4K8 759 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 TRABD2AQ86V40 505 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 BANPQ8N9N5 519 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 OR9A2Q8NGT5 310 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.98■□□□□ 0.79
LIME1-203ENST00000465591 ZNF675Q8TD23 568 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 KAT2AQ92830 837 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 SDCCAG3Q96C92 435 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 JSRP1Q96MG2 331 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 GATA5Q9BWX5 397 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 TP63Q9H3D4 680 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 PFDN4Q9NQP4 134 aa19.98■□□□□ 0.79
LIME1-203ENST00000465591 RYDENQ9NUL5 291 aaKnown RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 BOKQ9UMX3 212 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 POLR3HQ9Y535 204 aaPredicted RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 INTS1Q8N201 2190 aaKnown RBP19.98■□□□□ 0.79
LIME1-203ENST00000465591 LRBAP50851 2863 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 APCP25054 2843 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 ANKRD33BA6NCL7 494 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 AQP7O14520 342 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 ABCB1P08183 1280 aaPredicted RBP19.97■□□□□ 0.79
LIME1-203ENST00000465591 SNRPB2P08579 225 aaKnown RBP19.97■□□□□ 0.79
LIME1-203ENST00000465591 NAA20P61599 178 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 CEBPEQ15744 281 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 NTNG2Q96CW9 530 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 APOPT1Q96IL0 206 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 RILPQ96NA2 401 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 SLC6A15Q9H2J7 730 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 SLC35C2Q9NQQ7 365 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 MKS1Q9NXB0 559 aa19.97■□□□□ 0.79
LIME1-203ENST00000465591 SLC17A7Q9P2U7 560 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms