RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 GFM2Q969S9 779 aaKnown RBP16.43■□□□□ 0.22
COL7A1-205ENST00000465238 SCMH1Q96GD3 660 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 SENP5Q96HI0 755 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-205ENST00000465238 CNPPD1Q9BV87 410 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 KLHL1Q9NR64 748 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 ANKRD10Q9NXR5 420 aa16.43■□□□□ 0.22
COL7A1-205ENST00000465238 ASPDHA6ND91 283 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 GABRR3A8MPY1 467 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 AKAP10O43572 662 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 SLC19A2O60779 497 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 ZFAND5O76080 213 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 LRATO95237 230 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 LBPP18428 481 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 ERVK-8P63133 956 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 OC90Q02509 493 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 SPRED3Q2MJR0 410 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 SPINK14Q6IE38 97 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 FAM180BQ6P0A1 224 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 HSDL2Q6YN16 418 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 RPS19BP1Q86WX3 136 aaKnown RBP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 GALNT12Q8IXK2 581 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 CCDC116Q8IYX3 515 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 LRRC34Q8IZ02 419 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 LRRC25Q8N386 305 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 FAM98AQ8NCA5 519 aaKnown RBP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 DOK4Q8TEW6 326 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF721Q8TF20 911 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 CNRIP1Q96F85 164 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF681Q96N22 645 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 BBS4Q96RK4 519 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 REEP4Q9H6H4 257 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 CXorf21Q9HAI6 301 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 SLCO1B3Q9NPD5 702 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 TAS2R7Q9NYW3 318 aa16.42■□□□□ 0.22
COL7A1-205ENST00000465238 NOP53Q9NZM5 478 aaKnown RBP16.42■□□□□ 0.22
COL7A1-205ENST00000465238 CSMD1Q96PZ7 3565 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 MAN1A2O60476 641 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 ATP1B1P05026 303 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 DDX5P17844 614 aaKnown RBP16.41■□□□□ 0.22
COL7A1-205ENST00000465238 MPIP34949 423 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 HPCAL1P37235 193 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 RPL3P39023 403 aaKnown RBP16.41■□□□□ 0.22
COL7A1-205ENST00000465238 ALDH6A1Q02252 535 aaKnown RBP16.41■□□□□ 0.22
COL7A1-205ENST00000465238 BNC2Q6ZN30 1099 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-205ENST00000465238 FAM47EQ6ZV65 393 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 R3HCC1LQ7Z5L2 792 aaKnown RBP16.41■□□□□ 0.22
COL7A1-205ENST00000465238 PPCDCQ96CD2 204 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 MTERF3Q96E29 417 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 FBXL20Q96IG2 436 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 MAGED4Q96JG8 741 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 GPR137Q96N19 417 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 HES7Q9BYE0 225 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 BRINP2Q9C0B6 783 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 CDCP1Q9H5V8 836 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 ASIC5Q9NY37 505 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 LRFN1Q9P244 771 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 SH3BGRL2Q9UJC5 107 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 EXO1Q9UQ84 846 aaKnown RBP16.41■□□□□ 0.22
COL7A1-205ENST00000465238 ERVK-19Q9WJR5 959 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 PKDREJQ9NTG1 2253 aa16.41■□□□□ 0.22
COL7A1-205ENST00000465238 GTF3C1Q12789 2109 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 GOLGA8QA0A0J9YX86 632 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 GOLGA8OA6NCC3 632 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 GOLGA8NF8WBI6 632 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 SDHDO14521 159 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 NEURL1O76050 574 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 SP1P08047 785 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 G6PDP11413 515 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 PRF1P14222 555 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 EPHA3P29320 983 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 NTSP30990 170 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 NXNQ6DKJ4 435 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 SLC25A25Q6KCM7 469 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 XKRXQ6PP77 449 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 RNF111Q6ZNA4 994 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 RGS9BPQ6ZS82 235 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 LARP4Q71RC2 724 aaKnown RBP eCLIP16.4■□□□□ 0.22
COL7A1-205ENST00000465238 GALNTL5Q7Z4T8 443 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 MCEMP1Q8IX19 187 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 FAM9CQ8IZT9 166 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF321PQ8N8H1 164 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 OR5L2Q8NGL0 311 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 FRMD6Q96NE9 622 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 WDR55Q9H6Y2 383 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-205ENST00000465238 CHST11Q9NPF2 352 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 SH3BP4Q9P0V3 963 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF223Q9UK11 482 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-205ENST00000465238 ZNF835Q9Y2P0 537 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 USH1CQ9Y6N9 552 aa16.4■□□□□ 0.22
COL7A1-205ENST00000465238 NCOA6Q14686 2063 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-205ENST00000465238 MYO1GB0I1T2 1018 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 HRKO00198 91 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 TBX19O60806 448 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 WISP2O76076 250 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 IGKV3-11P04433 115 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 ST13P50502 369 aaKnown RBP16.39■□□□□ 0.21
COL7A1-205ENST00000465238 RNF4P78317 190 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 DUSP2Q05923 314 aa16.39■□□□□ 0.21
COL7A1-205ENST00000465238 MAP4K2Q12851 820 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms