RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 CCDC28BQ9BUN5 200 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 RBM24Q9BX46 236 aaKnown RBP3.31□□□□□ -1.88
CLK1-208ENST00000464454 RAB11FIP5Q9BXF6 653 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 NLNQ9BYT8 704 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 NMNAT2Q9BZQ4 307 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 MIOXQ9UGB7 285 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 BCAP29Q9UHQ4 241 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 CLCA3PQ9Y6N3 262 aa3.31□□□□□ -1.88
CLK1-208ENST00000464454 NOTCH3Q9UM47 2321 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 A0A0A6YYD4 124 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 NPIPA5A0A0B4J1W7 369 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 TEX48A0A1B0GUV7 120 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 A0A1W2PPR1 153 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 RPL37AP8A6NKH3 93 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 NPIPA5E9PKD4 350 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 K7ERI5 159 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 CYB561D2O14569 222 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 EI24O14681 340 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 B3GALNT1O75752 331 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 FCGR3AP08637 254 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 CCDC159P0C7I6 412 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 GHRP10912 638 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 HSD17B1P14061 328 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 MAT2AP31153 395 aaKnown RBP3.3□□□□□ -1.88
CLK1-208ENST00000464454 ETV5P41161 510 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 SLC7A2P52569 658 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 GABPB1Q06547 395 aaPredicted RBP3.3□□□□□ -1.88
CLK1-208ENST00000464454 PDIA5Q14554 519 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 ANKRD55Q3KP44 614 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 TTC31Q49AM3 519 aaPredicted RBP3.3□□□□□ -1.88
CLK1-208ENST00000464454 LIPKQ5VXJ0 399 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 REP15Q6BDI9 236 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 RAET1GQ6H3X3 334 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 IRGCQ6NXR0 463 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 GOLGA7Q7Z5G4 137 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 ADCK1Q86TW2 530 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 VPS36Q86VN1 386 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 RANBP3LQ86VV4 465 aaPredicted RBP3.3□□□□□ -1.88
CLK1-208ENST00000464454 AMZ2Q86W34 360 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 CDC20BQ86Y33 519 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 LRRC49Q8IUZ0 686 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 CSNK1G2-AS1Q8NCQ2 148 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 OR56B1Q8NGI3 324 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 DQX1Q8TE96 717 aaKnown RBP3.3□□□□□ -1.88
CLK1-208ENST00000464454 FCGR1BQ92637 280 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 CPXM1Q96SM3 734 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 IL1RL2Q9HB29 575 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 NRN1Q9NPD7 142 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 SLC7A10Q9NS82 523 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 SOHLH2Q9NX45 425 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 TAS2R16Q9NYV7 291 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 ACTR3BQ9P1U1 418 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 IL20RAQ9UHF4 553 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 IKZF3Q9UKT9 509 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 ZNF346Q9UL40 294 aaKnown RBP3.3□□□□□ -1.88
CLK1-208ENST00000464454 EMCNQ9ULC0 261 aa3.3□□□□□ -1.88
CLK1-208ENST00000464454 IGHV3-16A0A0C4DH30 117 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ACOD1A6NK06 481 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 STK17BO94768 372 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 SEMA4FO95754 770 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 MT-ND1P03886 318 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 HCKP08631 526 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ZCCHC18P0CG32 403 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 DNAJB1P25685 340 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 CCND2P30279 289 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 CHRNA3P32297 505 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 TRIM23P36406 574 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 GSK3BP49841 420 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 SGSHP51688 502 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 SPP2Q13103 211 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ZSWIM7Q19AV6 140 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 TMEM44Q2T9K0 475 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ACSF3Q4G176 576 aaPredicted RBP3.29□□□□□ -1.88
CLK1-208ENST00000464454 TCTEX1D4Q5JR98 221 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 TAF3Q5VWG9 929 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 SPINK14Q6IE38 97 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ARMCX5Q6P1M9 558 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ABRAXAS1Q6UWZ7 409 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ZNF841Q6ZN19 808 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 MOB2Q70IA6 237 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 SLC47A2Q86VL8 602 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 GPBP1Q86WP2 473 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 POM121L12Q8N7R1 296 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ZNF397Q8NF99 534 aaPredicted RBP3.29□□□□□ -1.88
CLK1-208ENST00000464454 NCLNQ969V3 563 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 CCDC51Q96ER9 411 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 FOXN4Q96NZ1 517 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 TSPAN18Q96SJ8 248 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 GPR174Q9BXC1 333 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 RNF41Q9H4P4 317 aaPredicted RBP3.29□□□□□ -1.88
CLK1-208ENST00000464454 NGBQ9NPG2 151 aa3.29□□□□□ -1.88
CLK1-208ENST00000464454 ZNF490Q9ULM2 529 aaPredicted RBP3.29□□□□□ -1.88
CLK1-208ENST00000464454 MRPL11Q9Y3B7 192 aaKnown RBP3.29□□□□□ -1.88
CLK1-208ENST00000464454 C19orf81C9J6K1 198 aa3.28□□□□□ -1.88
CLK1-208ENST00000464454 ADAM12O43184 909 aa3.28□□□□□ -1.88
CLK1-208ENST00000464454 TRIM16O95361 564 aa3.28□□□□□ -1.88
CLK1-208ENST00000464454 PTBP3O95758 552 aaKnown RBP3.28□□□□□ -1.88
CLK1-208ENST00000464454 ECDO95905 644 aaPredicted RBP3.28□□□□□ -1.88
CLK1-208ENST00000464454 OAS1P00973 400 aaKnown RBP3.28□□□□□ -1.88
CLK1-208ENST00000464454 GATA2P23769 480 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms