RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, human

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-215	ENST00000460158	DFNA5	O60443	496 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ACSL4	O60488	711 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	NADK	O95544	446 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	PATE4	P0C8F1	98 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CFC1B	P0CG36	223 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CFC1	P0CG37	223 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PRSS56	P0CW18	603 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	RRAS	P10301	218 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	MYL6B	P14649	208 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PTGER4	P35408	488 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ATP5C1	P36542	298 aa	Known RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	SPAM1	P38567	509 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	NSF	P46459	744 aa	Known RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	RGS4	P49798	205 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ASCL1	P50553	236 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ATP12A	P54707	1039 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CLDN8	P56748	225 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SST	P61278	116 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	YWHAG	P61981	247 aa	Known RBP eCLIP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	XIAP	P98170	497 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ARHGAP1	Q07960	439 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	RASGEF1B	Q0VAM2	473 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	BST1	Q10588	318 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	TAF10	Q12962	218 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	GPR17	Q13304	367 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	VEZF1	Q14119	521 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PDIA5	Q14554	519 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	P2RY6	Q15077	328 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	USF2	Q15853	346 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	ODF4	Q2M2E3	257 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	EXOC3L2	Q2M3D2	409 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ZNF829	Q3KNS6	432 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	FAM174B	Q3ZCQ3	159 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	HIKESHI	Q53FT3	197 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PDLIM3	Q53GG5	364 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	RABGAP1L	Q5R372	815 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	AGBL2	Q5U5Z8	902 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SEL1L3	Q68CR1	1132 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	LRRC66	Q68CR7	880 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CYB5D1	Q6P9G0	228 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	TTC23L	Q6PF05	361 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SH2D5	Q6ZV89	423 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	STXBP4	Q6ZWJ1	553 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SLC16A9	Q7RTY1	509 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ERAS	Q7Z444	233 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SERINC5	Q86VE9	423 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CDR2L	Q86X02	465 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	FAM131B	Q86XD5	332 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ECHDC2	Q86YB7	292 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	APLF	Q8IW19	511 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	ANKRD13C	Q8N6S4	541 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ZNF611	Q8N823	705 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	BMPER	Q8N8U9	685 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CNBD1	Q8NA66	436 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	C17orf47	Q8NEP4	570 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	OR6S1	Q8NH40	331 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CDC26	Q8NHZ8	85 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ERMN	Q8TAM6	284 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	TRMT10A	Q8TBZ6	339 aa	Known RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	PHLDA1	Q8WV24	401 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	PIGB	Q92521	554 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PRRC1	Q96M27	445 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	FAM20A	Q96MK3	541 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	F2RL3	Q96RI0	385 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	C19orf43	Q9BQ61	176 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ALKBH7	Q9BT30	221 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	URM1	Q9BTM9	101 aa	Known RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	IDI2	Q9BXS1	227 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	MIS12	Q9H081	205 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SIRPD	Q9H106	197 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	DNTTIP1	Q9H147	329 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	LRRC19	Q9H756	370 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	AUNIP	Q9H7T9	357 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	MED20	Q9H944	212 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	CDH20	Q9HBT6	801 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	APMAP	Q9HDC9	416 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	MED4	Q9NPJ6	270 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PIGV	Q9NUD9	493 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	SPHK1	Q9NYA1	384 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	HACD3	Q9P035	362 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	PDP1	Q9P0J1	537 aa	Predicted RBP	3	□□□□□ -1.93
VPS8-215	ENST00000460158	GCNT4	Q9P109	453 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	RNF14	Q9UBS8	474 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	STAP1	Q9ULZ2	295 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	ZNF510	Q9Y2H8	683 aa		3	□□□□□ -1.93
VPS8-215	ENST00000460158	STK36	Q9NRP7	1315 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158		A0A087WUV0	522 aa	Predicted RBP	2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	IGHV4-61	A0A0C4DH41	118 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158		A0A0J9YYE9	177 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158		A0A0U1RQV5	110 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	ILVBL	A1L0T0	632 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	MBLAC1	A4D2B0	266 aa	Predicted RBP	2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	SLC28A1	O00337	649 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	ZNF264	O43296	627 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	AP5Z1	O43299	807 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	LCMT2	O60294	686 aa	Known RBP	2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	ATP5H	O75947	161 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	DFFB	O76075	338 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	NDUFB10	O96000	172 aa		2.99	□□□□□ -1.93
VPS8-215	ENST00000460158	IGHV4-59	P01825	116 aa		2.99	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms