RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 SLC7A13Q8TCU3 470 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 FAM46AQ96IP4 442 aaKnown RBP11.31□□□□□ -0.6
SMPD4-213ENST00000454468 LRR1Q96L50 414 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 TSSK6Q9BXA6 273 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 C6orf106Q9H6K1 298 aaPredicted RBP11.31□□□□□ -0.6
SMPD4-213ENST00000454468 DDX28Q9NUL7 540 aaKnown RBP11.31□□□□□ -0.6
SMPD4-213ENST00000454468 GDE1Q9NZC3 331 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 PCDHGA2Q9Y5H1 932 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 A0A1W2PR48 441 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 PRAMEF25A6NGN4 478 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 HMGN4O00479 90 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 MED26O95402 600 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 GKN3PP0CG01 181 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 TLX1P31314 330 aaPredicted RBP11.31□□□□□ -0.6
SMPD4-213ENST00000454468 DPTQ07507 201 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 ILF3Q12906 894 aaKnown RBP eCLIP11.31□□□□□ -0.68e-7■■■□□ 15
SMPD4-213ENST00000454468 PUM1Q14671 1186 aaKnown RBP eCLIP11.31□□□□□ -0.6
SMPD4-213ENST00000454468 EPHX3Q9H6B9 360 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 NDOR1Q9UHB4 597 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 PADI2Q9Y2J8 665 aa11.31□□□□□ -0.6
SMPD4-213ENST00000454468 TSPAN11A1L157 253 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 LRIT2A6NDA9 550 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 OR2W5A6NFC9 320 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TRIM64CA6NLI5 447 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 PRKNO60260 465 aaPredicted RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 KIAA0513O60268 411 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 EML2O95834 649 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 ALPPP05187 535 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 INPP1P49441 399 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 KHKP50053 298 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 STXBP1P61764 594 aaKnown RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 CTF1Q16619 201 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 ZNF404Q494X3 552 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 CDC73Q6P1J9 531 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 SLC16A12Q6ZSM3 486 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 ANKRD13BQ86YJ7 626 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 DNAJC22Q8N4W6 341 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 DACT3Q96B18 629 aaPredicted RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TPSD1Q9BZJ3 242 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 OR51V1Q9H2C8 321 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TRIM45Q9H8W5 580 aaPredicted RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 IL21RQ9HBE5 538 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 SACM1LQ9NTJ5 587 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 ERVK13-1Q9NX77 482 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 PIAS3Q9Y6X2 628 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TRIOO75962 3097 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TCRBV21S2A2A0A5A6 115 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 LOC110117498-PIK3R3F6TDL0 507 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 EGFP01133 1207 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 SAGP10523 405 aaPredicted RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 BMP4P12644 408 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 IGFALSP35858 605 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 ZNF33BQ06732 778 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 DLX2Q07687 328 aaPredicted RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TPRG1LQ5T0D9 272 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 GTF2IRD2BQ6EKJ0 949 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 TCTN3Q6NUS6 607 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 SLC30A6Q6NXT4 461 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 GTF2IRD2Q86UP8 949 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 GALNT12Q8IXK2 581 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 C10orf53Q8N6V4 93 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 OR2L3Q8NG85 312 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 OR1E3Q8WZA6 343 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 POP5Q969H6 163 aaKnown RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 AMDHD1Q96NU7 426 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 WDR12Q9GZL7 423 aaKnown RBP11.3□□□□□ -0.6
SMPD4-213ENST00000454468 DUSP21Q9H596 190 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 HRASLS2Q9NWW9 162 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 CLEC4AQ9UMR7 237 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 CYP8B1Q9UNU6 501 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 HEATR5BQ9P2D3 2071 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 CHD9Q3L8U1 2897 aa11.3□□□□□ -0.6
SMPD4-213ENST00000454468 FAM183AA6NL82 134 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 FCMRO60667 390 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 IFNA16P05015 189 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 CEACAM5P06731 702 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 NR2F6P10588 404 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 HOXB6P17509 224 aaKnown RBP11.29□□□□□ -0.6
SMPD4-213ENST00000454468 HSD17B2P37059 387 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 TGM4P49221 684 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 PGDP52209 483 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 MVDP53602 400 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 VSX2P58304 361 aaPredicted RBP11.29□□□□□ -0.6
SMPD4-213ENST00000454468 RPA4Q13156 261 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 NCF4Q15080 339 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 TMEM196Q5HYL7 178 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 ZC3H12BQ5HYM0 836 aaKnown RBP11.29□□□□□ -0.6
SMPD4-213ENST00000454468 FCRLBQ6BAA4 426 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 ADAMTSL4Q6UY14 1074 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 DCDC5Q6ZRR9 648 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 KBTBD8Q8NFY9 601 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 RPLP0P6Q8NHW5 317 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 SPATA5L1Q9BVQ7 753 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 DNMT3AQ9Y6K1 912 aaPredicted RBP11.29□□□□□ -0.6
SMPD4-213ENST00000454468 PRSS38A1L453 326 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 ZNF701M0R085 212 aaPredicted RBP11.29□□□□□ -0.6
SMPD4-213ENST00000454468 B4GALT2O60909 372 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 APOA1P02647 267 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 ADORA3P0DMS8 318 aa11.29□□□□□ -0.6
SMPD4-213ENST00000454468 SRSF5Q13243 272 aaKnown RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms