RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 GSTM5P46439 218 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 KRT6CP48668 564 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ASCL1P50553 236 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 NEK2P51955 445 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 NAA20P61599 178 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 MRPS22P82650 360 aaKnown RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 IRF9Q00978 393 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 SLC7A5Q01650 507 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 DUSP8Q13202 625 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TESK1Q15569 626 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 FBXL19-AS1Q494R0 122 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 NHSL2Q5HYW2 709 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 PRAMEF20Q5VT98 475 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TIGD3Q6B0B8 471 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 RTL6Q6ICC9 239 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 SLC30A6Q6NXT4 461 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 SLC48A1Q6P1K1 146 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ENPP6Q6UWR7 440 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 LYPD8Q6UX82 237 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 DGAT2L6Q6ZPD8 337 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 WDR53Q7Z5U6 358 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 VWA5B2Q8N398 1253 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 METTL4Q8N3J2 472 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ZNF615Q8N8J6 731 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 GBP7Q8N8V2 638 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 ZNF441Q8N8Z8 693 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 OR1J4Q8NGS1 313 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 GOT1L1Q8NHS2 421 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 SPPL2AQ8TCT8 520 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 FAM222BQ8WU58 562 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ISL2Q96A47 359 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TMCO6Q96DC7 493 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TMEM41AQ96HV5 264 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 LCORQ96JN0 433 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 RILPQ96NA2 401 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ZFP3Q96NJ6 502 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 FMO2Q99518 471 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TIMP4Q99727 224 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 C1QTNF3Q9BXJ4 246 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 ACBD3Q9H3P7 528 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 METTL7AQ9H8H3 244 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 CALHM2Q9HA72 323 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 HHATLQ9HCP6 504 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 SEMA4BQ9NPR2 832 aaPredicted RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 VPS29Q9UBQ0 182 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TRPS1Q9UHF7 1281 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 BCAP29Q9UHQ4 241 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 PCTPQ9UKL6 214 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 SLC12A4Q9UP95 1085 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 PCDHA9Q9Y5H5 950 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 FAM215AQ9Y5M1 114 aa6.49□□□□□ -1.37
VPS41-208ENST00000448833 TEP1Q99973 2627 aaKnown RBP6.49□□□□□ -1.37
VPS41-208ENST00000448833 CCDC168Q8NDH2 2452 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 HIVEP1P15822 2718 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 ESYT3A0FGR9 886 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CD8B2A6NJW9 211 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 POC1B-GALNT4F8VUJ3 575 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 H3BQF6 201 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 ULK1O75385 1050 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 ERAL1O75616 437 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 CTAG2O75638 210 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 PPM1BO75688 479 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 ACSL3O95573 720 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 IL18BPO95998 194 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CELA3AP09093 270 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 RFPL3SP0C7P2 107 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CYP4B1P13584 511 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CPN1P15169 458 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 ABCD3P28288 659 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 SSTR4P31391 388 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 UQCRC1P31930 480 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CEACAM8P31997 349 aaPredicted RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 MPIP34949 423 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 KRT20P35900 424 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CASP3P42574 277 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 MAGEA12P43365 314 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 PPICP45877 212 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CDK9P50750 372 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 FBXW4P57775 412 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CSTF3Q12996 717 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 HEPACAMQ14CZ8 416 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 RASA2Q15283 850 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 TRADDQ15628 312 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 NSUN5P2Q63ZY6 315 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 VASNQ6EMK4 673 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 AAGABQ6PD74 315 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 BLOC1S3Q6QNY0 202 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 COMMD6Q7Z4G1 85 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 CAMKMTQ7Z624 323 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 RETREG3Q86VR2 466 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 SLC22A9Q8IVM8 553 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 RNF175Q8N4F7 328 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 RPRMLQ8N4K4 120 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 MMGT1Q8N4V1 131 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 OR4F6Q8NGB9 312 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 OR52B6Q8NGF0 335 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 ZPLD1Q8TCW7 415 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 SELENOMQ8WWX9 145 aa6.48□□□□□ -1.37
VPS41-208ENST00000448833 SREK1Q8WXA9 508 aaKnown RBP6.48□□□□□ -1.37
VPS41-208ENST00000448833 IFT81Q8WYA0 676 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms